PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771814
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 360aa    MW: 40951.7 Da    PI: 5.377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.2e-31231290159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  676771814 231 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 290
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-33216292IPR003657WRKY domain
SuperFamilySSF1182905.36E-28224292IPR003657WRKY domain
PROSITE profilePS5081129.023226292IPR003657WRKY domain
SMARTSM007741.9E-37231291IPR003657WRKY domain
PfamPF031061.3E-27232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGIDLSLKLE KEKNEERSKY SCEKEEEEDD DNAIEEKDEK MVGEDETEDS GLSSRTRKDE  60
NEREEVLTIR LTIHQNILCE NMLTSMDGDQ LLQMQIEMEH VKEENTRLRK LVEQSLQDYR  120
QLEMKFPGSD QTNKMDLEMF LGAQAKARKR GIERSTSLNL VDGELGLSLS LQKKQKQEVN  180
KEVDSHNKQR YNSSNIIQGQ DIINTQPVIT ASPGNRKARV SVRARCETAT MNDGCQWRKY  240
GQKTAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS  300
SASTSPFLLL DSSDNLSHSS YFQQNDSNNR SIRSLINFDD PSSRGGDHVS SSQNRLNWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-24218294176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771814
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300320.0KF430032.1 Brassica rapa WRKY transcription factor 9 (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564134.10.0probable WRKY transcription factor 9
SwissprotQ9C9F01e-144WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A3P6BRV80.0A0A3P6BRV8_BRACM; Uncharacterized protein (Fragment)
STRINGBo2g057610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-116WRKY DNA-binding protein 9