PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771770
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 343aa    MW: 38116.6 Da    PI: 7.6981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771770genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.13.9e-15259283226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ktelC+ +++tGtC+yGd C+FaHg
  676771770 259 KTELCNKWQETGTCPYGDHCQFAHG 283
                9***********************8 PP
2zf-CCCH21.15.5e-07296321126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykte Cr  +++ +C+yG rC+F H+
  676771770 296 YKTEVCRMVLAGDICPYGHRCHFRHS 321
                9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-18252290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-11254289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23257285IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9257284IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-12259283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-13291324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9291326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272295323IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5295322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MENEIAPFTY SGSSTGMLNS HGEPSGGGGG VVTTSLLCDQ LYHHSSRNVM QQQRQDMVNR  60
EALCYTRLHE ASLEAEVLRL ENTELRSMNR HLKKELDQLI RSSIQNRFSY DRVPLRMLSN  120
LSIGGNNNRD ADEAENQNRA PNQRDDVSDE SPTSVIANED LNRSSLPKSI SVRSNGYSKA  180
SQGANGGGAA AAAQCGKSRE TVPKPGACGQ QLTTTEKGIS EREALLRVDI GTQKVYVRGG  240
KKEEEEEIEV EVYNQGMTKT ELCNKWQETG TCPYGDHCQF AHGIKELRPV IRHPRYKTEV  300
CRMVLAGDIC PYGHRCHFRH SLSEQEKLMA GGCKPNKSFK LVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22259324570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894891e-147AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105366.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_018508330.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-144C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A397YQ200.0A0A397YQ20_BRACM; Uncharacterized protein
TrEMBLA0A3P6BWL40.0A0A3P6BWL4_BRACM; Uncharacterized protein
TrEMBLM4CJA40.0M4CJA4_BRARP; Uncharacterized protein
STRINGBra004288.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-143C3H family protein