PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771586
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 185aa    MW: 20525.4 Da    PI: 10.264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771586genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-11115185174
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                f++ ++++d +k++rl lp +f++e+g+++++  t+ l  ++g     +l  r +++r+ l+kGWk+F +angL
  676771586 115 FVTLTLTHDGFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTMCMANL-QRESQERMNLGKGWKDFGRANGL 185
                7788899********************99665..8***************.355556699************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0337108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-561103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.59761108IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-762104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-11109185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-12111185IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-10115185IPR003340B3 DNA binding domain
SMARTSM010190.4115185IPR003340B3 DNA binding domain
CDDcd100171.12E-9115185No hitNo description
PROSITE profilePS5086310.955115185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
KKIIFKISKQ LADHRLKLHD TVFAGEKRVR KNNSEAEVDS SSSDNSFLVA PVTASNLQED  60
YQESSGRKNL GKGLIDFAKA NGLNMGESFT FELIWKNATP VLSLLGTGFR SQNRFVTLTL  120
THDGFKNSRL GLPLPFMREN GMNEPGTIAL LGKDGTMCMA NLQRESQERM NLGKGWKDFG  180
RANGL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676771586
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622609.16e-68PREDICTED: B3 domain-containing protein REM-like 1
RefseqXP_013683882.13e-66B3 domain-containing protein REM12
SwissprotP0CAP41e-30REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078HP168e-65A0A078HP16_BRANA; BnaC03g26790D protein
TrEMBLA0A0D3B7H06e-65A0A0D3B7H0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6APF37e-65A0A3P6APF3_BRAOL; Uncharacterized protein
STRINGBo3g041930.11e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.15e-33B3 family protein