PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676769614
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 496aa    MW: 52910.1 Da    PI: 6.3696
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676769614genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1703.6e-22389451163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++lk ++++l +e+
  676769614 389 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLKSQYEELVAEN 451
                89********************************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-26101207IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.2E-36246364No hitNo description
Gene3DG3DSA:1.20.5.1706.2E-18381447No hitNo description
PfamPF001702.9E-20389451IPR004827Basic-leucine zipper domain
SMARTSM003387.1E-21389453IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.817391454IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-11392448No hitNo description
CDDcd147027.48E-23394444No hitNo description
PROSITE patternPS000360396411IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MKLLEKRKSK NAKKNNQVVI LLQAKHEENT NKRPSVPEPS KKWVEEEKAI EGDTIETDED  60
TRPATDSSSL KLEHLEFKNN VPEQSSGLSV KLFTGLVNVT MGSSEMEQSG KENEPKTPPP  120
PSSAPASAPV ASQEPSSGGV SAGTATPDWS GFQAYSPVPP HGYVASSPQP HPYMWGVQHM  180
MPPYGTPPHP YVAMYPPGGM YGHPSLPPGS YPYSPYAMPS PNGMADASGN TGSGVEGDAK  240
QAEVKEKLPI KRSKGSLGSL NMIIGKNNET GKNSGTASAN GACSKSAESA SDGSSEGSDA  300
NSENDSGSRH NGKDGETASD SAHGPPRNGS NQPVNQNVPI MPVSATGVPG PPTNLNIGMD  360
YWSGHGNVST TVAGVVVDGS QPQPWLQDER ELKRQRRKQS NRESARRSRL RKQAECDELA  420
QRADVLNGEN ASLRAEINKL KSQYEELVAE NSTLKNRFST VSSLEGVNSD KNKPEPEAST  480
RQDVAETSRG SYNNPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405411RRSRLRK
2405412RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676769614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535050.0AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637770.10.0PREDICTED: transcription factor HBP-1a
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLA0A0D3CDL90.0A0A0D3CDL9_BRAOL; Uncharacterized protein
STRINGBo5g048660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]