PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676769454
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 676aa    MW: 75700.9 Da    PI: 7.0512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676769454genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.22.6e-1302866681373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                lv+lL+ c ea+++++ +++++++ar  +lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e  +al+++++v+Pi+kf h+taN
  676769454 286 LVNLLTGCLEAIRTRNIAAINHFIARTGDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFERMVEDEPGNALRFLNQVTPIPKFIHFTAN 385
                6899*******************************99*************************************************************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                +++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef++ v++rled++l++L+vk+g
  676769454 386 EMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLEDVRLWMLHVKEG 480
                **************************************************....***************************.7***************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E++aVn+v+q+h++l + ++ +   ++++ l++s++P  +v++eqea+hns ++ +r++++l+yysa+fd+++++l+++s  r+k+E++l+grei+n+va
  676769454 481 ESVAVNCVMQMHKTLYDGTAAAI--RDFVGLIRSTNPVALVIAEQEAEHNSMQLETRVFNSLKYYSAIFDAIHTNLATDSLIRVKIEEMLFGREIRNIVA 578
                ***************88777777..99************************************************************************* PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg...yrveee...........sgslv.lgWkdrpLvsvSaW 373
                ceg++r+erh  +++Wr+++e+ GF+++ ++e+++ q k+llr+++ s++   ++ve +            gs v l W+d+pL++vSaW
  676769454 579 CEGSHRQERHMGFRHWRRMMEQLGFRSLGVTEREVLQSKMLLRMYGsSNEegfFNVERSnedgnvgegggGGSGVtLRWSDQPLYTVSAW 668
                *********************************************9754456999996666799999998555555************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.682260633IPR005202Transcription factor GRAS
PfamPF035149.1E-128286668IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVS VHFPMNTQRL DLPCSSSFSR KETPSSRPLG  60
RSISLDNNNN NNKPIERKTG GCSLKQSIKL PPLATTRGSV EGFSWSNDNN NSNRGKKGLK  120
RLAEEDKEDE SCLSRVKRQR SETGDDHSRG FWFEHFTAQN SSPALPFSLT CSGDDDDEEK  180
VCFVPSEVIS QPLPSNPHWA NSVITELAGL GDKDIESSRP AAVKEASGSS TSASSESQSL  240
RHRVPEPTNG ARNPYSHRGS TEERAIENVN NNNNNHRHDL QRDFELVNLL TGCLEAIRTR  300
NIAAINHFIA RTGDLASPRG RTPMTRLIAY YIEALALRVA RMWPHIFHIA PPREFERMVE  360
DEPGNALRFL NQVTPIPKFI HFTANEMLLR AFEGKERVHI IDFDIKQGLQ WPSFFQSLAS  420
RSNPPHHVRI TGIGESKLEL NETGDRLHGF AEAMNLQFEF HPVVDRLEDV RLWMLHVKEG  480
ESVAVNCVMQ MHKTLYDGTA AAIRDFVGLI RSTNPVALVI AEQEAEHNSM QLETRVFNSL  540
KYYSAIFDAI HTNLATDSLI RVKIEEMLFG REIRNIVACE GSHRQERHMG FRHWRRMMEQ  600
LGFRSLGVTE REVLQSKMLL RMYGSSNEEG FFNVERSNED GNVGEGGGGG SGVTLRWSDQ  660
PLYTVSAWAI GGSSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5929366826378Protein SCARECROW
5b3h_A2e-5929366825377Protein SCARECROW
5b3h_D2e-5929366825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676769454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391781.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLV4KGW40.0V4KGW4_EUTSA; Uncharacterized protein
STRINGXP_006391781.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein