PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676769310
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 695aa    MW: 77250.7 Da    PI: 6.7813
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676769310genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-1957110356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k +++t++q++eLe++F+ +++p++++r eL +kl+L+ +q+k+WFqNrR+++k
  676769310  57 KYRRHTSYQIQELESFFKVCPHPNEKQRLELGSKLSLESKQIKFWFQNRRTQMK 110
                56789**********************************************999 PP
2START177.95.9e-562294456206
                HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......E CS
      START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......g 89 
                a++el+k+a++++p+W   s    es n +e++++f+ sk   +  e +r++g+v  ++ +lve+l+d++ +W e+++     a+t+evis+g      g
  676769310 229 AMDELIKLAELDHPLWINCSksdkESMNHEEYRSIFAGSKHpgSAAEGSRETGLVLINSLTLVETLMDTN-RWAEMFErvvaVASTVEVISNGsggsrsG 327
                799***************999999999*********999888999999**********************.*******99999***************** PP

                EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS
      START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                 lqlm+ae+q++splvp R + f+Ry++q+g+g w++vdvS d +++  + +s+   ++lpSg++i++ +ng skvtw+eh +++g+++h l+++l++s+
  676769310 328 SLQLMQAEFQVMSPLVPiRQVKFLRYCKQHGDGLWAVVDVSYDTNREDDNLKSYGGLKRLPSGCIIQDIGNGCSKVTWIEHSEYEGSQIHPLYQQLLGSS 427
                ******************************************9999999999************************************************ PP

                HHHHHHHHHHHTXXXXXX CS
      START 189 laegaktwvatlqrqcek 206
                +  ga +w+atlqrqce+
  676769310 428 VGLGATKWLATLQRQCES 445
                ****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-1839112IPR009057Homeodomain-like
SuperFamilySSF466893.34E-1748112IPR009057Homeodomain-like
PROSITE profilePS5007116.35852112IPR001356Homeobox domain
SMARTSM003891.8E-1554116IPR001356Homeobox domain
CDDcd000861.97E-1557112No hitNo description
PfamPF000461.6E-1657110IPR001356Homeobox domain
PROSITE profilePS5084844.451215448IPR002913START domain
CDDcd088756.02E-98220444No hitNo description
SuperFamilySSF559618.65E-30223446No hitNo description
SMARTSM002343.9E-39224445IPR002913START domain
PfamPF018529.3E-50229445IPR002913START domain
SuperFamilySSF559613.3E-19470688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MNGDLDMSRE DINSSYPGRF GDDEFDESDS FEAMCSHDDK QEQHPKKKRK NNKKMTKYRR  60
HTSYQIQELE SFFKVCPHPN EKQRLELGSK LSLESKQIKF WFQNRRTQMK TQLERHENVI  120
LREENEKLRI ENGILKEAMK SPICNNCGGA APPVEVSYEQ QQLRIENAKL KHELDKLCAL  180
ANRFIGGSIS LDQPSNGGIG SQDLSVGHGF IRGTLISESS MCMDRAMVAM DELIKLAELD  240
HPLWINCSKS DKESMNHEEY RSIFAGSKHP GSAAEGSRET GLVLINSLTL VETLMDTNRW  300
AEMFERVVAV ASTVEVISNG SGGSRSGSLQ LMQAEFQVMS PLVPIRQVKF LRYCKQHGDG  360
LWAVVDVSYD TNREDDNLKS YGGLKRLPSG CIIQDIGNGC SKVTWIEHSE YEGSQIHPLY  420
QQLLGSSVGL GATKWLATLQ RQCESYTTLL SSQDQTGLSL SGTKSTLTLA QRMKRNFYSG  480
ITASHIHKWE KLLAENVGQD TRILTRKSLQ PSGVVLSAAT SMWLPVTQQR LFEFLCDSKC  540
RNQWDILSNG ASMETMLLIP KGQHEGTCVS LLQPAGKHQN ESSMLILQET WNDASGALVV  600
YAPVDVPSMN IVMNGGDSAN VALLPSGFSI LPDGSSSSSS WSDQIESRGC LLTVGFQILV  660
NSVPTAKLNM ESVQTVNNLI ACTIHKIKAA LRIPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14459PKKKRKNNKKMTKYRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676769310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106897.10.0PREDICTED: homeobox-leucine zipper protein HDG7
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A3P6CY220.0A0A3P6CY22_BRACM; Uncharacterized protein
STRINGBra028295.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]