PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676768814
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 134aa    MW: 15062.3 Da    PI: 10.8408
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676768814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57364.62.3e-2066126362
     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLK 62 
                ++r+w eeDe+++L Gl+d++aktg++p++++d+f++f+  +si +k+sk+ql++Kir+LK
  676768814  66 INRIWDEEDELTVLNGLVDYQAKTGVEPKSNWDEFHRFLGgGSIAAKFSKDQLLSKIRKLK 126
                68************************************96369*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-1467126IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MVDPRHLDLS NDSSPSSQSL LRRKSLRKHT SKPSPPSEPV PEQVTKKNKN KKKNKIKNKK  60
LASSVINRIW DEEDELTVLN GLVDYQAKTG VEPKSNWDEF HRFLGGGSIA AKFSKDQLLS  120
KIRKLKGGRG SCKP
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676768814
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590206.13e-35PREDICTED: uncharacterized protein LOC106298614
SwissprotQ9ASZ11e-21STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBLA0A0D3CT541e-33A0A0D3CT54_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RAV91e-33A0A3N6RAV9_BRACR; Uncharacterized protein
STRINGBo6g064770.12e-34(Brassica oleracea)
STRINGBo7g043690.15e-33(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.14e-23DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Nietzsche M,Schießl I,Börnke F
    The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants.
    Front Plant Sci, 2014. 5: p. 54
    [PMID:24600465]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]