PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 408aa MW: 46206.1 Da PI: 8.022

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676768780	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	230	283	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ 676768780 230 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 283 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	227	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	228	283	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	230	283	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	231	282	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRP TTDQEDHEEL DLGFWRRALD SRTSSLVSNS 60 SSKTTNNHHH PLEDLSLSNN SHHHQHQHQH QHQQQHHHHP QLLPNCNGSN ILTSFQFPTQ 120 QQHLQGFLAH DLNTHLRPIR GIPLYQNPPP HHHHHRPPPC FPFDPSSLIP SSSPAPTGIN 180 NNSNSFGTST VSNSGLLTNP NYHNHQHHHQ TLTRPRFMPR FPAKRSMRAP RMRWTTTLHA 240 RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDKA AASSGQSELY 300 ENGSSGDNNS DDWMLDMNRK SRDSDELTNP LEKSNGLWTN SSGEARLHGK LIDNVAEIML 360 PSEGFKQKEI EGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTWQRRRP TTDQEDHEEL DLGFWRRALD SRTSSLVSNS  60
SSKTTNNHHH PLEDLSLSNN SHHHQHQHQH QHQQQHHHHP QLLPNCNGSN ILTSFQFPTQ  120
QQHLQGFLAH DLNTHLRPIR GIPLYQNPPP HHHHHRPPPC FPFDPSSLIP SSSPAPTGIN  180
NNSNSFGTST VSNSGLLTNP NYHNHQHHHQ TLTRPRFMPR FPAKRSMRAP RMRWTTTLHA  240
RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDKA AASSGQSELY  300
ENGSSGDNNS DDWMLDMNRK SRDSDELTNP LEKSNGLWTN SSGEARLHGK LIDNVAEIML  360
PSEGFKQKEI EGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-16	231	285	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676768780

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY048689	0.0	AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBank	BT029211	0.0	BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487391.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	0.0	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0D2ZR21	0.0	A0A0D2ZR21_BRAOL; Uncharacterized protein
STRING	Bo00774s020.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-177	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]