PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765826
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 338aa    MW: 38441.8 Da    PI: 7.0733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765826genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12161207455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  676765826 161 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 207
                699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16161226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-11162210No hitNo description
SMARTSM003537.7E-14163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNMFSTRWFS EQELEDNNII QQYHMNSIVG EIHEAPLTLP HSFSTLMTTT NDPSYDDLME  60
TKPSKILKTT YISPKLPPPT SFPLPPNSKH HLPHQPSSRI LSFENASPNV MDHEYSPTYV  120
NSIFNPNVED EVPPNRLNEP TNRKGTKRAQ PLYRSQSTAQ DHIIAERKRR EKLTQRFVAL  180
SALVPGLKKM DKASVLGDAL KHIKYLQERV GEFEEQKRER RLESMVLVKK SKLILDDNNQ  240
SSSSSCCEDG SSGSDLPEIE VRFSDKDVLI KILCEKQKGH VAKIMAEIEK FDFSITNSSV  300
LPFGPTLDIT ITAKKESDFD MTLMDVVKSL RSALSKFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765826
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469673.10.0PREDICTED: transcription factor bHLH25
SwissprotQ9T0720.0BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J3CWY60.0A0A1J3CWY6_NOCCA; Transcription factor bHLH25
TrEMBLA0A3P5ZBZ90.0A0A3P5ZBZ9_BRACM; Uncharacterized protein
STRINGBra011790.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-170bHLH family protein