PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676765780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 286aa MW: 31151.9 Da PI: 8.0072 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 126 | 180 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k 676765780 126 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.6e-39 | 126 | 215 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLEesF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l 676765780 126 RKKLRLTKQQSALLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 215 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.103 | 122 | 182 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-15 | 124 | 186 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-18 | 124 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-17 | 126 | 180 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-15 | 126 | 180 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.44E-16 | 126 | 183 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 157 | 180 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.6E-10 | 182 | 216 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-25 | 182 | 225 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MGLDDSCNTG LVLGLGLSPT PNNYNHTIKK SSSTVEHHLD PSLTLSLSGE SYKTKTVEMT 60 DAGAGDQIFR QSSSHSGISS FSSGRVKRER EISGGDGEEE AEETTERVVC SRVSDDHEDE 120 EGVSARKKLR LTKQQSALLE ESFKLHSTLN PKQKQALARQ LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEF LKKCCETLTD ENRRLQKELQ DLKALKMSQP FYMHMPAATL TMCPSCERLS 240 GGAGGAATGG GSGGTVAVDG GTGKGAFSIV TKPRFYSPFT NPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 174 | 182 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676765780 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ441254 | 0.0 | AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447389.1 | 1e-173 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-163 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A3N6QDA5 | 1e-169 | A0A3N6QDA5_BRACR; Uncharacterized protein | ||||
STRING | Bra011786.1-P | 1e-169 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-156 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|