PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676765576
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 375aa    MW: 42733.6 Da    PI: 6.324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676765576genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53e-102543342078
                HHH.HTT...............---..--SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT- CS
         B3  20 kkfaeeh...............ggkkeesktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegD 78 
                 + + ++               +++k++++  +l de++ +W v l+    +k sg+    y lt GW+e vkan+LkegD
  676765576 254 FNDLIRNdflthvelriiqediNSDKKTGIGAVLVDERNVKWGVMLKRwemKKDSGKgswnYALTCGWNEIVKANRLKEGD 334
                4444444455555666666666566678899********8888888444663333335589*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037547.3E-38204326IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.102.7E-18231363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17232352IPR015300DNA-binding pseudobarrel domain
CDDcd100173.86E-12233349No hitNo description
PROSITE profilePS5086311.138254355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYYSDLVAAA ETDITSRNFC FLVDAAVMMY DKEMSNPDTK TMAKTLCAKE EEEEEEEEER  60
DKRIFHLFPR KPRNSIKKLV TRRSPQRYYQ NLNGASTLSS RNPLQCPSLL LDLNTIPADD  120
FEMNTPQNPN SSSSLLLLDL CSIPDDTENT GMTNPRNPNS QSSMSSCLTE KKTSRKRRAV  180
EDKKRCVKSK KAKFDHDPFS WIGRETPESL IQLMNDVSDT VIKWGERTDL RLIFQKTLFK  240
TDVNPAESRL SMPFNDLIRN DFLTHVELRI IQEDINSDKK TGIGAVLVDE RNVKWGVMLK  300
RWEMKKDSGK GSWNYALTCG WNEIVKANRL KEGDDISIWS FRWGGLLCFA LVTPPSVAPS  360
SSSLALCLSD ESLVS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676765576
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396952.11e-147B3 domain-containing protein At3g25182
SwissprotQ9LSF77e-99Y3518_ARATH; B3 domain-containing protein At3g25182
TrEMBLV4KKK31e-146V4KKK3_EUTSA; Uncharacterized protein
STRINGXP_006396952.11e-146(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.12e-39B3 family protein