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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676764382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | SBP | ||||||||
Protein Properties | Length: 385aa MW: 43532.5 Da PI: 8.334 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.9 | 1.3e-42 | 108 | 183 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rh+vCe+hsk++vv+vsg+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++ 676764382 108 CQVYGCNMDLSSSKDYHKRHRVCETHSKTSVVIVSGIEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 183 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.4E-34 | 102 | 169 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.864 | 105 | 182 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.85E-40 | 106 | 185 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.2E-33 | 108 | 181 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAGFEQGLSN ELDKDDHVFM SGMAGKSSAV SISKVASSTC VVPSSLLHVE EEEGEENQSS 60 SSKLSRIDFK LRSFMDYGNH DGTSARDFSL PAKKTRASSN PCSQNPLCQV YGCNMDLSSS 120 KDYHKRHRVC ETHSKTSVVI VSGIEQRFCQ QCSRFHFLSE FDDGKRSCRR RLAGHNERRR 180 KPSFYFLPGK RHKLLRTSQG NKFLEDSSVN DFSLVLPESF PGSFLYRVMD EHDHHRASRL 240 VSFKEEPMFP GQNRVYESKP LVYSPEASGV SSIWDLHESA PRPTCALSLL SAQSQQHFSE 300 TPNKTFSITQ PNQILNHSTI DYHQMQPLRT GPVKTKPGSS SRNGKGSSTV DLLQLSSHLQ 360 RIEQQQRNFT DEVKQEYNEL YFPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-31 | 107 | 181 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676764382 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391054.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_024007394.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_024007399.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Swissprot | Q94JW8 | 1e-175 | SPL6_ARATH; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | V4JSQ4 | 0.0 | V4JSQ4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391054.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9275 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-170 | SBP family protein |
Publications ? help Back to Top | |||
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