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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676764260 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
bHLH |
| Protein Properties |
Length: 379aa MW: 41360.3 Da PI: 6.041 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676764260 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 20.3 | 1e-06 | 267 | 305 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++++ + L++l+ + +K + a++L++A+eYIk L
676764260 267 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 305
5778999**********998.....8****************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042631 | Biological Process | cellular response to water deprivation |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0071215 | Biological Process | cellular response to abscisic acid stimulus |
| GO:0071472 | Biological Process | cellular response to salt stress |
| GO:2000214 | Biological Process | regulation of proline metabolic process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MAEEFQATSA ICGSGGGAWW NSPRSVMSPS DNFLSPCFGA AITSNDFGSQ ENNIKSRMTC 60
TDNSIAFGQR EADSDSGGST VTIDSTLQMM GLGQEDLTSS FIRSSQDQDH GQGFLSTTTS 120
PYLLNPACSS SSSSSSSSSL LRSFYDPEPS PYSFVSTTSC SINDPQLSWA NNKTNPHHQA 180
AYGLISNFSN NTNTRPFWSS SSTTNLNNTT QNSFVTTPQI ISTRLEDKTK NQKTRGQSES 240
VKRAKDNESA SKKQRVTTPS PLPTFKVRKE NLRDQITSLQ QLVSPFGKTD TASVLQEAIE 300
YIKFLHDQVT VLSTPYMKQG ASIPQQQQIS GKSKNQDENE NQELRAHGLC LVPLSSTFPV 360
ANETTADFWT PTFGGNNFR
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
| GenBank | AY085602 | 0.0 | AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence. |
| GenBank | AY113072 | 0.0 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Chen HC, et al.
The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
Plant Mol. Biol., 2017. 94(4-5): p. 531-548
[PMID:28631168]
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