PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRAS

Protein Properties

Length: 2001aa MW: 222352 Da PI: 7.1301

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676763678	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	395	7.8e-121	241	584	2	358
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lLl+cAeavs+++le+a++lL ++s+l++p+g++ qR+aayf eA++arl++s+ ++y+alp++ ++++s + ++a+++f+ +sP++kfsh+taNqa 676763678 241 LTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQA 340 579*********************************************************************************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 I ea+e+e+ vHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g s e+l++tg+rL++fA++lg+pfef + +a+++ +l+ e+L+v+++Ea 676763678 341 IQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SMEALQATGKRLSDFADKLGLPFEFCP-LAEKVGNLDAERLNVRKREA 435 ********************************************....***********************.59************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll++ei+nv+a 676763678 436 VAVHWLQ--HSLYDVTGSDTH----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVG 528 **9..999988888777....******************.899********************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 g +r + + +e+Wre+++++GFk ++l +aa+qa lll +++sdgy++ ++++ + 676763678 529 GPSRSGEVK-FESWREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYTLVDDNELI 584 888776.***************************************9887643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	6.54E-5	141	205	No hit	No description
Gene3D	G3DSA:3.30.70.330	5.8E-19	167	197	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50985	61.575	214	580	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-118	241	584	IPR005202	Transcription factor GRAS
SuperFamily	SSF54928	3.63E-18	915	1019	IPR012677	Nucleotide-binding alpha-beta plait domain
CDD	cd12313	2.89E-23	916	996	No hit	No description
Gene3D	G3DSA:3.30.70.330	5.8E-19	917	999	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	16.398	918	998	IPR000504	RNA recognition motif domain
SMART	SM00360	1.6E-15	919	994	IPR000504	RNA recognition motif domain
Pfam	PF00076	2.4E-10	920	977	IPR000504	RNA recognition motif domain
SuperFamily	SSF90209	7.85E-9	1013	1052	IPR001876	Zinc finger, RanBP2-type
Gene3D	G3DSA:4.10.1060.10	2.1E-12	1016	1049	IPR001876	Zinc finger, RanBP2-type
PROSITE profile	PS50199	9.348	1017	1051	IPR001876	Zinc finger, RanBP2-type
SMART	SM00547	1.5E-5	1024	1048	IPR001876	Zinc finger, RanBP2-type
PROSITE pattern	PS01358	0	1026	1045	IPR001876	Zinc finger, RanBP2-type
Gene3D	G3DSA:3.30.70.330	1.3E-22	1050	1158	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	1.28E-23	1053	1157	IPR012677	Nucleotide-binding alpha-beta plait domain
CDD	cd12313	6.85E-29	1074	1154	No hit	No description
PROSITE profile	PS50102	17.063	1076	1156	IPR000504	RNA recognition motif domain
SMART	SM00360	1.8E-22	1077	1152	IPR000504	RNA recognition motif domain
Pfam	PF00076	7.0E-16	1078	1144	IPR000504	RNA recognition motif domain
SMART	SM00443	5.3E-15	1566	1612	IPR000467	G-patch domain
PROSITE profile	PS50174	16.802	1568	1614	IPR000467	G-patch domain
Pfam	PF01585	9.8E-14	1569	1610	IPR000467	G-patch domain
SuperFamily	SSF53474	8.11E-35	1688	1872	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	5.2E-38	1690	1826	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF12697	1.2E-13	1721	1984	IPR000073	Alpha/beta hydrolase fold-1
SuperFamily	SSF53474	8.11E-35	1900	1981	IPR029058	Alpha/Beta hydrolase fold
Gene3D	G3DSA:3.40.50.1820	5.2E-38	1929	1984	IPR029058	Alpha/Beta hydrolase fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0043484	Biological Process	regulation of RNA splicing
GO:0005634	Cellular Component	nucleus
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2001 aa Download sequence Send to blast
MAESGDFNGG QLHSPIRTTS SGSSSSNRSA PPPPPPPSVM HPTPPLSVCG FSGLPVFPSD 60 RRTAMSVQPM EQDSSSSSSS PTVWVDAIIR DLIHSSTSVS IPQLIQNVRD IIFPCNPNLG 120 ALLEYRLRSL MLLDPSSSSD PCPPQTFDSI TQPLYHQISN NPPPVTQQQQ QQQQQQQQPK 180 PPPPPPPIQQ QQEKENSSAD APPPETVTST ETTVVNTAEA LRERKEEIKR QKQDEEGLHL 240 LTLLLQCAEA VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY 300 AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS VHIIDLDIMQ 360 GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV 420 GNLDAERLNV RKREAVAVHW LQHSLYDVTG SDTHTLWLLQ RLAPKVVTVV EQDLSHAGSF 480 LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES 540 WREKMQQCGF KGISLAGNAA TQATLLLGMF PSDGYTLVDD NELIHYLLFT WGVSLLRRRR 600 AAFTSPGLRL ERGKGFELLS FEYTLLPPSE VCSVRCPEMD PGRFGRQQEW DNTSAPEGYG 660 PEHDPNTRFG VSYDGGYPDE RLLRDDVYNY PPGHDTLGHL PQSRRRDYEE NYPRELRRND 720 KPYADANYAA DYYPDIEVGS RNGYYRDEGH ERSSRYDGRD DYSTSDYNYR SRNYHHNRDD 780 SRERDYDYAR RSYDSDYERG SVRDGNRKSR DSQDREWDSR DREWDSRDRE WDRRCFSRER 840 DVSPHKRYEK SRSRSAGRDG FSRSRSPRGR SHGRSYREDS YEGDHWHESE RRRDYEDRHD 900 QDHFSAVYNI LPSLTPSATV VVKGLSTKST EEDLYQLLAE WGPLQHVRVI REQNSGIPRG 960 FAFIDFPTVD AARTMMERIE PDGIAVDGRK LIFHYSKPRA GVPRRQENAS RRNYGGNRGM 1020 IVPTDWMCTI CGCINFARRT SCFQCNEPKT KDSPSADVGL SNSTAGKRNS ESGPTHVLVV 1080 RGLDEDADEE IIRYEFSKHA PIKDLRLVRD KFTHVSRGFA FVHFFSVEDA TKALEATNGI 1140 ILEKNGKILR VAYAKSVHGS GTGTSASSHS SNLAAAAIEA AAFSQQYDAV GWAPKEYTPD 1200 EKQTGGQAKG VGEIEAQKGA SGPQSGYVWD EASGYYYDAA SGYYYDGNSG LYYDSSSGLW 1260 YSYDPQTQQY VACPDQNNES KSTEKQPEIA KTEKSSQQKV IISAAATPTV EKAISLPDAV 1320 QAAAAAAIAS EKREKERVKE IKLASKSSIL ASKKKMSNVL TMWKQRSHET QTQRPSLGGD 1380 NPPAGLAEAR PSFSAVQSKG KLKSDTMIAK ERTTSNHGVA ALSTTPATES SSSSTAGRPL 1440 MGVMRGSFGG TPGGASSSAN VQVPPVLPSA PSPSVPVSVS GSGRRRFSET PTAVPQTSYR 1500 DRAAERRNLY GSSAPSGDDV TDSNDDIMGL RKGASDPTPF PPGVGGRGLT TTEVSSFDVI 1560 TEEKAIDENN VGNRMLRNMG WHEGSGLGRD GSGMKEPVQA QGVDRRAGLG SHQKKLDAEF 1620 EAQPGDTYRT VLHKKALARF RDIQLLPRFF SMKKWLVGGA VVIVLIALGA WAIVSFTPPP 1680 SKRCGTPGGP PITAPRIRLS DGRYLAYQEH GVSRQNATFK IIFIHAFATF RRDAVIANRV 1740 RPGFLEKNGI YVVSYDRPGY GESDPHSSRN EKTLAHDVEQ LADQLQLGSK FYVVGYSMGG 1800 QAVWGVLKYI PHRLAGATLL CPVTNSWWPS FPDSLTWELW NKQSKTERFA MLLTHNTPWL 1860 LYWWNNQKLF QTSAVMQSSP TMFSPQDMAL LPKLAGRVAY KNQTTQQGTH ESLDRDMIVG 1920 FGKWGFDPMK IENPFPKGEG SVQLWQGDDD RLVPVQLQRI IAQKLTWIKY HEVPGAGHLF 1980 PNADGMAETV LKELLPIPQA S

Sequence ? help Back to Top

Protein Sequence Length: 2001 aa Download sequence Send to blast

MAESGDFNGG QLHSPIRTTS SGSSSSNRSA PPPPPPPSVM HPTPPLSVCG FSGLPVFPSD  60
RRTAMSVQPM EQDSSSSSSS PTVWVDAIIR DLIHSSTSVS IPQLIQNVRD IIFPCNPNLG  120
ALLEYRLRSL MLLDPSSSSD PCPPQTFDSI TQPLYHQISN NPPPVTQQQQ QQQQQQQQPK  180
PPPPPPPIQQ QQEKENSSAD APPPETVTST ETTVVNTAEA LRERKEEIKR QKQDEEGLHL  240
LTLLLQCAEA VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY  300
AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS VHIIDLDIMQ  360
GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV  420
GNLDAERLNV RKREAVAVHW LQHSLYDVTG SDTHTLWLLQ RLAPKVVTVV EQDLSHAGSF  480
LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES  540
WREKMQQCGF KGISLAGNAA TQATLLLGMF PSDGYTLVDD NELIHYLLFT WGVSLLRRRR  600
AAFTSPGLRL ERGKGFELLS FEYTLLPPSE VCSVRCPEMD PGRFGRQQEW DNTSAPEGYG  660
PEHDPNTRFG VSYDGGYPDE RLLRDDVYNY PPGHDTLGHL PQSRRRDYEE NYPRELRRND  720
KPYADANYAA DYYPDIEVGS RNGYYRDEGH ERSSRYDGRD DYSTSDYNYR SRNYHHNRDD  780
SRERDYDYAR RSYDSDYERG SVRDGNRKSR DSQDREWDSR DREWDSRDRE WDRRCFSRER  840
DVSPHKRYEK SRSRSAGRDG FSRSRSPRGR SHGRSYREDS YEGDHWHESE RRRDYEDRHD  900
QDHFSAVYNI LPSLTPSATV VVKGLSTKST EEDLYQLLAE WGPLQHVRVI REQNSGIPRG  960
FAFIDFPTVD AARTMMERIE PDGIAVDGRK LIFHYSKPRA GVPRRQENAS RRNYGGNRGM  1020
IVPTDWMCTI CGCINFARRT SCFQCNEPKT KDSPSADVGL SNSTAGKRNS ESGPTHVLVV  1080
RGLDEDADEE IIRYEFSKHA PIKDLRLVRD KFTHVSRGFA FVHFFSVEDA TKALEATNGI  1140
ILEKNGKILR VAYAKSVHGS GTGTSASSHS SNLAAAAIEA AAFSQQYDAV GWAPKEYTPD  1200
EKQTGGQAKG VGEIEAQKGA SGPQSGYVWD EASGYYYDAA SGYYYDGNSG LYYDSSSGLW  1260
YSYDPQTQQY VACPDQNNES KSTEKQPEIA KTEKSSQQKV IISAAATPTV EKAISLPDAV  1320
QAAAAAAIAS EKREKERVKE IKLASKSSIL ASKKKMSNVL TMWKQRSHET QTQRPSLGGD  1380
NPPAGLAEAR PSFSAVQSKG KLKSDTMIAK ERTTSNHGVA ALSTTPATES SSSSTAGRPL  1440
MGVMRGSFGG TPGGASSSAN VQVPPVLPSA PSPSVPVSVS GSGRRRFSET PTAVPQTSYR  1500
DRAAERRNLY GSSAPSGDDV TDSNDDIMGL RKGASDPTPF PPGVGGRGLT TTEVSSFDVI  1560
TEEKAIDENN VGNRMLRNMG WHEGSGLGRD GSGMKEPVQA QGVDRRAGLG SHQKKLDAEF  1620
EAQPGDTYRT VLHKKALARF RDIQLLPRFF SMKKWLVGGA VVIVLIALGA WAIVSFTPPP  1680
SKRCGTPGGP PITAPRIRLS DGRYLAYQEH GVSRQNATFK IIFIHAFATF RRDAVIANRV  1740
RPGFLEKNGI YVVSYDRPGY GESDPHSSRN EKTLAHDVEQ LADQLQLGSK FYVVGYSMGG  1800
QAVWGVLKYI PHRLAGATLL CPVTNSWWPS FPDSLTWELW NKQSKTERFA MLLTHNTPWL  1860
LYWWNNQKLF QTSAVMQSSP TMFSPQDMAL LPKLAGRVAY KNQTTQQGTH ESLDRDMIVG  1920
FGKWGFDPMK IENPFPKGEG SVQLWQGDDD RLVPVQLQRI IAQKLTWIKY HEVPGAGHLF  1980
PNADGMAETV LKELLPIPQA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	224	581	3	360	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Splicing factor that controls alternative splicing of the developmental regulator ABI3. Reduces splicing of a cryptic intron in ABI3, leading to a decreased in ABI3-beta transcript (PubMed:20525852). Regulates the splicing of the receptor-like kinase SNC4/LRKL-2.6 (PubMed:25267732). {ECO:0000269\|PubMed:20525852, ECO:0000269\|PubMed:25267732}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676763678

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070066	0.0	AY070066.1 Arabidopsis thaliana unknown protein (At3g54230) mRNA, complete cds.
GenBank	AY096433	0.0	AY096433.1 Arabidopsis thaliana unknown protein (At3g54230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403602.1	0.0	SUPPRESSOR OF ABI3-5
Swissprot	F4JCU0	0.0	SUA_ARATH; SUPPRESSOR OF ABI3-5
TrEMBL	V4LMU5	0.0	V4LMU5_EUTSA; Uncharacterized protein
STRING	XP_006403602.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein

Publications ? help Back to Top
Schindler S, et al. Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. BMC Genomics, 2008. 9: p. 159 [PMID:18402682] Zhang Z, et al. Splicing of receptor-like kinase-encoding SNC4 and CERK1 is regulated by two conserved splicing factors that are required for plant immunity. Mol Plant, 2014. 7(12): p. 1766-75 [PMID:25267732]