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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676763650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | SRS | ||||||||
Protein Properties | Length: 726aa MW: 80159.7 Da PI: 7.0898 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 165.5 | 3e-51 | 570 | 716 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq..salsstklssaeskkele 101 ++ C+dCGn+akk+C + RCRtCCksrg++CathvkstWvp++ r +++ss++ ++k+ + ++s+k+ s+l +++++ ++++ 676763650 570 EEKVCRDCGNRAKKECLFDRCRTCCKSRGYNCATHVKSTWVPSSSSHRRSGSRSSSSSSD-------RKKKLKIDSSDKHnpSSLLIVPTATSSRQEKSF 662 6789**************************************998877755444433332.......222222222222200333333333333333334 PP DUF702 102 tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++ lP +++++avfr++rv++v++ ++ e++Yq++v+i+GhvfkG+L+++G+++ 676763650 663 KEGLPGKIEAPAVFRRTRVTAVSNnEQSEIGYQATVTISGHVFKGFLHYYGVDH 716 445*******************9967889***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.40.320 | 2.8E-18 | 37 | 139 | IPR013812 | Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain |
SuperFamily | SSF49303 | 2.3E-17 | 39 | 137 | IPR006102 | Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich |
Pfam | PF16353 | 1.9E-14 | 42 | 135 | IPR032312 | Beta-galactosidase, domain 4 |
Gene3D | G3DSA:2.70.98.10 | 5.3E-87 | 154 | 432 | IPR014718 | Glycoside hydrolase-type carbohydrate-binding |
SuperFamily | SSF74650 | 9.89E-79 | 158 | 433 | IPR011013 | Galactose mutarotase-like domain |
SMART | SM01038 | 2.2E-97 | 162 | 453 | IPR004199 | Beta galactosidase small chain/ domain 5 |
Pfam | PF02929 | 1.4E-70 | 166 | 432 | IPR004199 | Beta galactosidase small chain/ domain 5 |
Pfam | PF05142 | 7.0E-46 | 572 | 715 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-25 | 573 | 613 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.7E-27 | 666 | 714 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0009341 | Cellular Component | beta-galactosidase complex | ||||
GO:0004565 | Molecular Function | beta-galactosidase activity | ||||
GO:0030246 | Molecular Function | carbohydrate binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MALIFFCMHC IMSLCCLRGQ ALLSTNQGFI DGCHAEAQPL SLQVANAYFF NTTEELDLSW 60 KIHGDGVELG AGTLSIPVIK PQDSFDMEWK SGPWFSFWND TNAGELFLTI TAKLLNPTRS 120 LEAGHLLSST QIPLPSKRQI IPQAIKKMDA IITCETVGDF IKISQQDSWE LMINVQKGSI 180 EGWKVQGVLL MNEAILPCFW RAPTDNDKGG EDSSYFSRWK AAQLDNVEFL VESCSVKSIT 240 DKAVEIEFVY LGSSASDSSK SDALFKVNVT YTIYGSGDII TSWYVVPKSD LPPLPRVGIE 300 FHIEKTLDRV EWYGRGPFEC YPDRKSAAHV GIYEHNVGDM HVPYIVPGEC GGRTDVRWVT 360 FRNKDGVGIY ASTFGSSSPM QMNASYYTTG ELDRATHEED LIKGQNIEVH LDHKHMGIGG 420 DDSWTPCVVS GYGSDFDLGH LQGSTSQLES FLAYKLLNAI QLRHESVPNS STRFIITATV 480 ANPPSLLPWP PNQPSPSSTP FSPAVAVTIP DHSSSSSAAV SAARIITPDY MLGLRNIVFL 540 PPPPSHITHP TPVNLTAVEE NNKARNSNVE EKVCRDCGNR AKKECLFDRC RTCCKSRGYN 600 CATHVKSTWV PSSSSHRRSG SRSSSSSSDR KKKLKIDSSD KHNPSSLLIV PTATSSRQEK 660 SFKEGLPGKI EAPAVFRRTR VTAVSNNEQS EIGYQATVTI SGHVFKGFLH YYGVDHNKAF 720 PCLSKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cvm_A | 4e-33 | 41 | 432 | 634 | 1006 | Beta-galactosidase |
6cvm_B | 4e-33 | 41 | 432 | 634 | 1006 | Beta-galactosidase |
6cvm_C | 4e-33 | 41 | 432 | 634 | 1006 | Beta-galactosidase |
6cvm_D | 4e-33 | 41 | 432 | 634 | 1006 | Beta-galactosidase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676763650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK222134 | 0.0 | AK222134.1 Arabidopsis thaliana mRNA for beta Galactosidase - like protein, complete cds, clone: RAFL22-95-N04. | |||
GenBank | AY091780 | 0.0 | AY091780.1 Arabidopsis thaliana At3g54435 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010427143.1 | 0.0 | PREDICTED: uncharacterized protein LOC104712044 isoform X1 | ||||
Refseq | XP_019084873.1 | 0.0 | PREDICTED: uncharacterized protein LOC104712044 isoform X2 | ||||
TrEMBL | A0A0D3BY37 | 0.0 | A0A0D3BY37_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g119970.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26825 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 8e-74 | SHI-related sequence 6 |