PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676761316
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 361aa    MW: 39874.3 Da    PI: 5.3328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676761316genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10196243455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  676761316 196 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 243
                8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-16190261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.68E-11190247No hitNo description
PROSITE profilePS5088815.542192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17192261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7196243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEKQQTERTL NYLPLGQSDP FGNGNNEGTI GDFLGRFCNP QEISPLALQS YTLNPQISEG  60
FPIRFPPYPG QFGSDREFGS QQTGQESNKS SLLDPDSDRV QTTKSNSRKR KSIPVGGNGK  120
ESPASSSLTA SNSKISGEIV GSKAGKRSKQ DEAGSSKNVV EKCDDSKGDN KDETKAPEPI  180
KDYIHVRARR GQATDSHSLA ERARREKISE RMTLLQDLVP GCNRITGKAV MLDEIINYVQ  240
SLQRQVEFLS MKLATINPRM EFNANAALST EMIQQGESLT QSLYAMACSE QRLPSGYYSL  300
AKNMPRFSDT QFPSSDGFVQ AETPGFWEND LQSIVQMGFG DIQQQSNNNC SEPTLQMKLE  360
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676761316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418851.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLV4L4R90.0V4L4R9_EUTSA; Uncharacterized protein
STRINGXP_006418851.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]