PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676760932

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 420aa MW: 46707.6 Da PI: 6.6598

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676760932	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.3e-10	210	266	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l 676760932 210 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSV 266 9*******************************************9999877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-15	206	270	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	208	271	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	210	262	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	210	261	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.5E-9	210	264	No hit	No description
CDD	cd14703	9.92E-24	211	260	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDKEKSPAPP SGGLPPPSGR YSAFSPNGSS FAMKPESSFP HLTPSGSSSD ANRFSHDISR 60 MPDNPPKKLG HRRAHSEILT LPDDLSFDSD LGVVGAADGP SFSDETDEDL LYMYLDMDKF 120 NSSATSSSQM GEPSEPAWRN ELGTASNLQS APGSSSERPR IRHQHSQSMD GSTTIKPEML 180 MSGNEDVSGV DSKKAISAAK LSELALIDPK RAKRIWANRQ SAARSKERKM RYIAELERKV 240 QTLQTEATSL SAQLTLLQRD TNGLSVENNE LKLRVQTMEQ QVHLQDALND ALKEEVQHLK 300 VLTGQGVSNG ASVMNYGSFG SNQQFYPNNQ SMHTMLAAQQ FQQLQIHSQK QQQQQQHQQQ 360 QQQQQYQFQQ QQLYQLQLQQ QQRIQQEQQS GVAELRRPMS SSGQKESVTS PNVEAHSPKD

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDKEKSPAPP SGGLPPPSGR YSAFSPNGSS FAMKPESSFP HLTPSGSSSD ANRFSHDISR  60
MPDNPPKKLG HRRAHSEILT LPDDLSFDSD LGVVGAADGP SFSDETDEDL LYMYLDMDKF  120
NSSATSSSQM GEPSEPAWRN ELGTASNLQS APGSSSERPR IRHQHSQSMD GSTTIKPEML  180
MSGNEDVSGV DSKKAISAAK LSELALIDPK RAKRIWANRQ SAARSKERKM RYIAELERKV  240
QTLQTEATSL SAQLTLLQRD TNGLSVENNE LKLRVQTMEQ QVHLQDALND ALKEEVQHLK  300
VLTGQGVSNG ASVMNYGSFG SNQQFYPNNQ SMHTMLAAQQ FQQLQIHSQK QQQQQQHQQQ  360
QQQQQYQFQQ QQLYQLQLQQ QQRIQQEQQS GVAELRRPMS SSGQKESVTS PNVEAHSPKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676760932

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353381	0.0	AK353381.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417960.2	0.0	LOW QUALITY PROTEIN: probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	E4MXY4	0.0	E4MXY4_EUTHA; mRNA, clone: RTFL01-35-L02
STRING	Cagra.1671s0236.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]