PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760600
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79575.7 Da    PI: 5.7211
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760600genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  676760600  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                688999************************************************995 PP
2START2252.2e-702544672206
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                la +a++el+++a+++ep+W++++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a+tl+v+s+g    
  676760600 254 LAVAAMEELMRMAQVDEPLWKSLV--LDEEEYARTFPRGIGpkptgFRSEASRESAVVIMNHVNIVEILMDVN-QWSMVFAgmvsRAMTLAVLSTGvagn 350
                6789********************..************999********************************.************************** PP

                ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
      START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                  galq+m+ae+q++splvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv++++r +h+l++++v
  676760600 351 ynGALQVMSAEFQVPSPLVPtREIYFARYCKQQADGSWAVVDISLDSLQSNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKHMV 446
                ****************************************************8....******************************************* PP

                HHHHHHHHHHHHHHTXXXXXX CS
      START 186 ksglaegaktwvatlqrqcek 206
                ++g+a+gak+wva l+rqce+
  676760600 447 STGHAFGAKRWVAILDRQCER 467
                *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-2245122IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1955124IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
PfamPF000463.2E-1767122IPR001356Homeobox domain
CDDcd000868.01E-1967125No hitNo description
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084843.397244470IPR002913START domain
SuperFamilySSF559611.65E-33245469No hitNo description
CDDcd088755.52E-125248466No hitNo description
SMARTSM002343.3E-63253467IPR002913START domain
PfamPF018525.9E-63254467IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-5347433IPR023393START-like domain
SuperFamilySSF559614.32E-26486715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNHN YNHEDNNNNN DGFLRDDEFD SANTKSGSEN QEGGSGNDQD  60
PHHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSNYPLMSPP PLPPRPLELA MGNFGGDVYG NNSTDLFKSI  240
SAPTESDKPV IIDLAVAAME ELMRMAQVDE PLWKSLVLDE EEYARTFPRG IGPKPTGFRS  300
EASRESAVVI MNHVNIVEIL MDVNQWSMVF AGMVSRAMTL AVLSTGVAGN YNGALQVMSA  360
EFQVPSPLVP TREIYFARYC KQQADGSWAV VDISLDSLQS NPPVRCRRRA SGCLIQEMPN  420
GYSKVTWVEH VEVDDRGVHN LYKHMVSTGH AFGAKRWVAI LDRQCERLAS VMATNISSGE  480
VGVITNQEGR RSMLKLAERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDPGR  540
PPGIVLSAAT SFWIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS  600
LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI  660
LPDGNASGGA AGGEGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASMSC  720
ETA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001184911.10.0homeodomain GLABROUS 2
RefseqNP_001322673.10.0homeodomain GLABROUS 2
RefseqNP_001322674.10.0homeodomain GLABROUS 2
RefseqNP_001322675.10.0homeodomain GLABROUS 2
RefseqNP_001322676.10.0homeodomain GLABROUS 2
RefseqNP_001322677.10.0homeodomain GLABROUS 2
RefseqNP_001322678.10.0homeodomain GLABROUS 2
RefseqNP_001322680.10.0homeodomain GLABROUS 2
RefseqNP_172015.10.0homeodomain GLABROUS 2
RefseqNP_849596.10.0homeodomain GLABROUS 2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9DFH80.0B9DFH8_ARATH; AT1G05230 protein
STRINGAT1G05230.40.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2