PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760524
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 507aa    MW: 57048.1 Da    PI: 6.9178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760524genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10300341854
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 Er RR + +++f  L+ l+P++     +K++ a+i+ +A+e+Ik+L
  676760524 300 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIEHIKEL 341
                6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.55E-11285354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-9290346No hitNo description
PROSITE profilePS5088813.522292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-9292352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7300341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MTPNLPHKAT STQKVSFIDE TAPGDRLRNG KTERIVMGPM QRREKRHGTD RGERDRNIES  60
CSSKSLLCVN SDALTGKVSP RIISRLDGNM FEDIGCFDPN APGDTTAESH FSPAEPPPSV  120
TVFGSTSNSN CSLEDLSEFH LSPQDCSLAA APVHHLHINA TPSGDHQLRS SMPQNFQDPA  180
YAPQPNIWDN GYQDFVNLGP NHTTPHLLSL LQLPRSSLPH FANPSLQDII MTSSSACDSF  240
DPLFHLNFPF QPPNGTSLGV EDQTELNGVN NLIYAQENNN PENGLNRKPR GSRKRKVFPT  300
ERERRVHFKD RFGDLKNLIP NPTKNDRASI VGEAIEHIKE LLRTIEEFKM LLEKKRIVKQ  360
RNKRCRIEEG EDDVGDENYK AQSEVVEQCL VNKNNNSLRC SWLKRKSKFT EVDVRIIDDE  420
VTIKIVQKKK INCLLFVAKV IDQLQLDLHH AAGAQIGEHH SFLFNTKICE GSSVYASAIA  480
DRVMQVLEKQ YMEVLSSNNG YHCYTSD
Cis-element ? help Back to Top
SourceLink
PlantRegMap676760524
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584762.10.0PREDICTED: transcription factor bHLH89
RefseqXP_013696065.10.0transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLA0A078F9Z00.0A0A078F9Z0_BRANA; BnaC05g04240D protein
TrEMBLA0A0D3C8130.0A0A0D3C813_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EBF70.0A0A3P6EBF7_BRAOL; Uncharacterized protein
STRINGBo5g007310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]