PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759188
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 645aa    MW: 72799.1 Da    PI: 9.6955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759188genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-144898248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ll +avk++G+++W+++a+++g    ++ ++ +c++++q+++
        676759188 48 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVGsrssLNASGSNCRLKYQDLK 98
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.93E-743101IPR009057Homeodomain-like
SMARTSM007175.3E-846100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-548100IPR009057Homeodomain-like
PfamPF002492.6E-134898IPR001005SANT/Myb domain
CDDcd001672.46E-75098No hitNo description
PROSITE profilePS500906.4235098IPR017877Myb-like domain
Gene3DG3DSA:1.20.920.107.4E-17296442IPR001487Bromodomain
SMARTSM002971.5E-16306415IPR001487Bromodomain
CDDcd043695.65E-16313410No hitNo description
SuperFamilySSF473705.1E-17313413IPR001487Bromodomain
PfamPF004395.9E-11323400IPR001487Bromodomain
PROSITE profilePS5001412.927325396IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MEEEDAVITN GMNDEYTTRN IYSGSDSNNN RIGDGDGDGN CNLNQMSQVW GTWEELLLTC  60
AVKRHGSKDW DSVAKEVGSR SSLNASGSNC RLKYQDLKRR FQDSVDDDDD EERRGKNEAV  120
VVVAEEDDDD DDDIPWLEQL RSLRVAELRR EVQRCDDSIL SLQLKVKKLE EEKEGNDGDN  180
KPDLDDDSKP LRSLHHVTQP TGLYRQTTDS DHRSINESNS TASVDKTADH KTVQTNDNSR  240
NPDPDPARKS EEEEEEEEGT VSRRSGMSHS GELDESGTST GRHRKRKGLN YRSGEDISIR  300
GGSGGNINSD GNKSQPLMEF IKLIRSHPRG SVFESRLRSQ ETKDYKRLIR QHLDIKTIEK  360
KVEKGSYVSS SLSFYRDLKL LFTNAIVFFP TSSSESMAAQ ELRTFVSKEM KKKTWKSSYR  420
VIKAEAESSV SRQKSSAPSL VACKKKSSFS KNTFHSSSLK QNDEKKSQEV SEEKTVTTAA  480
RSSRRTSKSM EVVTKDTKMG RAKNNNKKQK ESRTDSSSDD DDDKEETHKT EKKTVVIASE  540
KKKSVAEFLK RIKKNSPQKG KETTSKDQKK SDGNVKKENS KAKPRELRSN STGKKKVEVE  600
NNSNKSSSKR KQSKKEADEV TAATTGKRGR ESGKDNQQPK KRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676759188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012776.10.0uncharacterized protein LOC18020113
TrEMBLV4NDJ90.0V4NDJ9_EUTSA; Uncharacterized protein
STRINGXP_006402623.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein