PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758518
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 340aa    MW: 36027 Da    PI: 6.9695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758518genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11156201555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  676758518 156 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 201
                99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.68E-13149205No hitNo description
SuperFamilySSF474597.33E-17149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.301151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9156201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNSSLLTPSS SSSSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDDDTPPP TSDSAVAGFH  60
HHDVDSRNQI TMIPLSHHHN PNDAVDGSVH ALYNGFSAGS LPFHLPQASS RGGLMKQGQT  120
QTQSQATAST TTGGTATTPQ TKPKVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN  180
GNKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAASVSS QISEDAGGSH ENTSSTSAEN  240
QTATKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR NPVISAVKDA  300
GVPLSPNLSV HSTNTASTSV VNGNGTSLVT VKDAPSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676758518
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937110.0AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730749.20.0transcription factor bHLH69-like
SwissprotQ8S3D51e-180BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A1J3EGL30.0A0A1J3EGL3_NOCCA; Transcription factor bHLH69 (Fragment)
STRINGBo1g011740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-140LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]