PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676757812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 23663.6 Da PI: 9.3129 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1.1e-11 | 121 | 162 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k + +W A I++ +++++lg+f + eeAa+++++a+ 676757812 121 LRGVYY-K-NMKWQAAIKVD-----KRQIHLGTFSSQEEAARLYDRAAF 162 59**96.5.7*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.177 | 109 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-7 | 120 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-6 | 121 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-9 | 121 | 165 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.90E-12 | 122 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-8 | 122 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEKGGGGPNG YVTPLPFLTA EEMITGIPNP NGVAAYNHEP AETVIQPKEE ETHIEERSRS 60 QRQRTPSKYM QFRSDFSDIS PDDSGSISPK WDQDICDSDQ PLKRRKRHSR KQVKNQEPCL 120 LRGVYYKNMK WQAAIKVDKR QIHLGTFSSQ EEAARLYDRA AFMCGREPNF ELSEEEKQKL 180 KRQSWEGFLA CTRRKITNKS KVYY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676757812 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018451862.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
Swissprot | Q56XP9 | 3e-90 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | M4F1E9 | 1e-107 | M4F1E9_BRARP; Uncharacterized protein | ||||
STRING | Bra034895.1-P | 1e-107 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 5e-81 | ERF family protein |