PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676757432
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 361aa    MW: 41394.9 Da    PI: 7.4468
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676757432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1377.3e-1279111335
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                ++k +rr+++NReAAr+sR+RKka++++Le+  
  676757432  79 PDKTQRRLAQNREAARKSRLRKKAYVQQLETSR 111
                689**************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-577135IPR004827Basic-leucine zipper domain
PfamPF001702.8E-979109IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.7679121IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.59E-781115No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-781122No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
PfamPF141448.1E-30167242IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNTTSTHFVP PTRFEIYEPL NQIGMWEESF KNNGGMYTPS NSIIIPTNQN PDSLSEDTSH  60
GAEGTPHKFD QEASTSRHPD KTQRRLAQNR EAARKSRLRK KAYVQQLETS RLKLIHLEQE  120
LDRARQQGFY SGNRVDTNAL GFPDKMSSGI VAFEMEYGHW VEEQNRQISE LRTVLHGQVS  180
DVELRLLVDN AMKHYFQLFR MKSAAAKIDV FYIMSGMWKT SAERFFLWIG GFRPSELLKV  240
LLPHFDPMMD QQVLDVCNLK QSCQQAEDAV SQGMEKLQHT LAESVAAGKL GEGSYIPQIT  300
CAMERLEALV SFVNQADHLR HETLQQMHRI LTTRQAARGL LALGEYFQRL RALSSSWETR  360
Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676757432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530850.0AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190270.10.0TGACG motif-binding factor 4
RefseqNP_001330616.10.0TGACG motif-binding factor 4
RefseqNP_001330617.10.0TGACG motif-binding factor 4
RefseqNP_001330618.10.0TGACG motif-binding factor 4
RefseqNP_196565.10.0TGACG motif-binding factor 4
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A1J3FJA90.0A0A1J3FJA9_NOCCA; Transcription factor TGA4
TrEMBLQ24JJ30.0Q24JJ3_ARATH; At5g10030
STRINGAT5G10030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]