PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755950
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 294aa    MW: 32907.5 Da    PI: 4.508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755950genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-061722101255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  676755950 172 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 210
                677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-8170213No hitNo description
SuperFamilySSF474591.57E-11170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-4171215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-10174217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTGEFEIAGI STGPWWSSPT NTTASVFSGY SLPCPTETSL DITDFGWQNF DNKTNDHNDD  60
FMNMHNNFFE GLLDPNGQLL TDSWPKATIS NAKSEILESF PFLDNTFLFD SEAESFLDHE  120
IRNHKSKEQI TQDSKNLTSK AQLEENSDEY SPRLLKRSRL ETLSPLPSFK VRKEKLGDRI  180
TALQQLVSPF GKTDTASVLN EAVEYIKFLQ EQVTVLSNPD HNTRGSVQRQ QCSDKKSINA  240
QEQEECSSRK QVDLASRGLC LMPISASYPV AAAAASAAEM NTADFWNLPF AINL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396624.21e-161LOW QUALITY PROTEIN: transcription factor bHLH114
SwissprotQ9M0X81e-157BH114_ARATH; Transcription factor bHLH114
TrEMBLV4L6X41e-168V4L6X4_EUTSA; Uncharacterized protein
STRINGXP_006396624.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]