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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676755560 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
bHLH |
| Protein Properties |
Length: 454aa MW: 50040.9 Da PI: 5.664 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676755560 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36 | 1.2e-11 | 274 | 316 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L
676755560 274 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 316
79*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MNGDGVWLDN TGESSQPGDD NDESNSNSWV RNPDENWFNN NNTQPPNSLH NNQNDFRFSG 60
GFPLNPSENL LLLLQQSIDS SSPLQHFTLD SVPQQQQQQQ SFLATKACIA SLLNVPTSNN 120
MNNPFDEFGF DSGFLGQIHG NQTMNFAGMS SPPDFLSSRS LPETSVGAGN IFSPLEFGGL 180
ASGVFENRAK VLKPLEVLAS SGSQPTLFQK RAAMRQSSSS KLCNSESSSE LRRSSYEREV 240
DDNSTGIIDI SGLNDESDEH HKGKKKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM 300
DRASILGDAI DYLKELLQRI NDLHTELEST PPTSSGLHPL TPTPQTLSYR VKEELCPSSS 360
LPSPKGQQAR IEVKLREGKA VNIHMFCGRR PGLLLSTMRA LDNLGLDVQQ AVISCFNGFA 420
LDVFRAEQCQ EGHDVLPEQI KAVLLDTAGY AGLL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 263 | 281 | KKKGMPAKNLMAERRRRKK |
| 2 | 275 | 282 | ERRRRKKL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK118011 | 0.0 | AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13. |
| GenBank | BT005377 | 0.0 | BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds. |
| GenBank | EU369670 | 0.0 | EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds. |
| Publications
? help Back to Top |
- Tarasov VA,Khadeeva NV,Mel'nik VA,Ezhova TA,Shestakov SV
The Atlg12860 gene of Arabidopsis thaliana determines cathelicidin-like antimicrobial activity.
Dokl. Biol. Sci., 2009.
[PMID:19760875] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Emmerstorfer A, et al.
Over-expression of ICE2 stabilizes cytochrome P450 reductase in Saccharomyces cerevisiae and Pichia pastoris.
Biotechnol J, 2015. 10(4): p. 623-35
[PMID:25641738] - Lee HG,Seo PJ
The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.
Plant J., 2015. 82(6): p. 962-77
[PMID:25912720] - Raissig MT,Abrash E,Bettadapur A,Vogel JP,Bergmann DC
Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(29): p. 8326-31
[PMID:27382177] - Fu ZW,Wang YL,Lu YT,Yuan TT
Nitric oxide is involved in stomatal development by modulating the expression of stomatal regulator genes in Arabidopsis.
Plant Sci., 2016. 252: p. 282-289
[PMID:27717464] - de Marcos A, et al.
A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.
Plant Physiol., 2017. 174(2): p. 823-842
[PMID:28507175]
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