PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754958
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Nin-like
Protein Properties Length: 926aa    MW: 102292 Da    PI: 5.3749
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754958genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.62.9e-29567617252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  676754958 567 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 617
                89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.2551637IPR003035RWP-RK domain
PfamPF020422.9E-27569617IPR003035RWP-RK domain
SuperFamilySSF542779.81E-22820910No hitNo description
Gene3DG3DSA:3.10.20.2402.3E-22822904No hitNo description
SMARTSM006667.4E-23824907IPR000270PB1 domain
PROSITE profilePS5174519.88824907IPR000270PB1 domain
CDDcd064071.32E-34825906No hitNo description
PfamPF005642.2E-16826906IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MENPSSSRDN SFCVPDVPTE DMDGWVKNLI SQEDMFSSSS TTELTNFESF ASWCNTPCAT  60
DFLFTQSTSP TPFGGFTALH ADPSPSFLGL EGRFVGEKRP LQERSSHFYC LSDTENVSGK  120
RSRSSNLTGA LECSVPRSLS HSLDEKMLKA LSLFMEFSGE GILAQFWTPA KTGDQYMLST  180
CDQAYLLDSR LSGYREVSRK FTFSAEKSQY SSPGLPGRVF ISGVPEWTSN VMYYKTAEYL  240
RMKHALDNDV RGSIAIPVLE AFGSSCCAVL ELVTCREKPN FDLELDSVCR ALQAVSLQTS  300
TIPRRQYLSS NQKEALAEIR DVLRAVCHAH RLPLALAWIP SSYSKGANDE LVKVYGKKSN  360
ETSLLCIEET ACYVNDMEME GFVNACLEHY LREGQGVVGR ALISNKPSFS SDVKTFDICE  420
YPLVQHARRF GLKAAVATKL RSTFTGDNDY ILEFFLPINM EGSSEQQLLL DSLSGTMQRI  480
CRTLRTVSDE VTEVGFRSGD IISILPRTTV SEGSFQTLLL DTDVNSARSI FSNISSDKSN  540
DIASSQGTLQ PEISGARRSE KKKSSTEKNV SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI  600
CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVEGGLKF DSVTGEFVAV GPFIQEFGTQ  660
QILPSHHGDA FFRSQGNMDE DASLQPLEVK SSDGGEVKLE EGVDTNQTGP ARTFMEPWDW  720
ISKQSGLNYS DDFDIGKRSE GINKDKDLCV RRCLSSLALA NDGKNKRTEC SNAIAEPNPS  780
ISSSMSDSSN GSGAVVAGSS STFMEQDWNQ TFRTHNNSGE SGSLLTVKAI YRDDTVRFKL  840
DPYAVGCSQL YKEVAKRFKL QEGAFQLKYL DDEEEWVMLV TDSDLQECLE ILKGMRKHTV  900
KFLVRDLPGT AMGSSAGSNG YLGTGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1556562RRSEKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402676.10.0protein NLP9
SwissprotQ9M1B00.0NLP9_ARATH; Protein NLP9
TrEMBLV4LK880.0V4LK88_EUTSA; Uncharacterized protein
STRINGBostr.20903s0181.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein