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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676754530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | DBB | ||||||||
Protein Properties | Length: 284aa MW: 32002.4 Da PI: 7.0031 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22 | 3.3e-07 | 45 | 85 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC++C +e H H+ 676754530 45 IQCDVCEKAPATLICCADEAALCAKCDVEVHAAnklaskHQ 85 57*****************************6556666665 PP | |||||||
2 | zf-B_box | 26.9 | 1e-08 | 97 | 128 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ + ek + +fC +++ llC+dC +++H 676754530 97 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 128 68*****************************4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.257 | 42 | 89 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-11 | 42 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.0E-5 | 45 | 86 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.25E-7 | 45 | 89 | No hit | No description |
PROSITE profile | PS50119 | 9.271 | 94 | 141 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-13 | 94 | 141 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-6 | 97 | 137 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.59E-7 | 97 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MITSKNEIKA RETEKKRNKQ SRRKRRRVGP NKLKGLAIIS IHMKIQCDVC EKAPATLICC 60 ADEAALCAKC DVEVHAANKL ASKHQRLFLD SLSTQFPPCD ICLEKAAFIF CVEDRALLCR 120 DCDEATHAPN TRSANHQRFL ATGIRVALSS TSCSKEVEMN HFDPSNQQNA KQILSKPPIQ 180 QPAAPSPPWA GDEFFRYSDL ECSNKQKEQL DLGELDWLAE MGFFGDQPDQ ETLTAAEVPE 240 LSVSHLAHVH TYNRPMKSNV SNKKPRLEVR YDDDEEHFLV PDLG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRRR |
2 | 23 | 27 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676754530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352961 | 0.0 | AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410272.1 | 1e-167 | B-box zinc finger protein 25 isoform X1 | ||||
Swissprot | Q9SID1 | 1e-160 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | V4LME7 | 1e-166 | V4LME7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410272.1 | 1e-167 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2711 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 1e-153 | salt tolerance homologue |
Publications ? help Back to Top | |||
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