PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676754132
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 1577aa    MW: 178300 Da    PI: 6.7258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676754132genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-1188132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + ++lG+g+W+ +++ + ++Rt+ q+ s+ qky
        676754132  88 PWTEDEHRRFLIGLQELGKGDWRGVSKNFVETRTPTQVASHAQKY 132
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.94681137IPR017930Myb domain
SuperFamilySSF466896.61E-1583138IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-1584136IPR006447Myb domain, plants
SMARTSM007171.4E-885135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-987130IPR009057Homeodomain-like
PfamPF002491.3E-988132IPR001005SANT/Myb domain
CDDcd001672.06E-688132No hitNo description
PfamPF078872.2E-32161321IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF522007.06E-6539659IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525409.41E-35673936IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000094.98E-4691830No hitNo description
Gene3DG3DSA:3.40.50.3006.5E-8694847IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009317.6E-17694890IPR002182NB-ARC
PRINTSPR003644.0E-14713728No hitNo description
PRINTSPR003644.0E-14789803No hitNo description
SuperFamilySSF467853.81E-89211016IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520582.27E-3610331313IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.5E-3410751302IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.1E-511011120IPR011713Leucine-rich repeat 3
PRINTSPR003644.0E-1411711187No hitNo description
PfamPF078879.3E-3214371575IPR012416CALMODULIN-BINDING PROTEIN60
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006950Biological Processresponse to stress
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1577 aa     Download sequence    Send to blast
MEPSEYPIDG TSSPLDLESP AKVWNQSDSC PDASSSLSMS GTENSGVTEA SSSSSLRKIV  60
SMDNLSKIDV YVSDDGSHVS GDRKKETPWT EDEHRRFLIG LQELGKGDWR GVSKNFVETR  120
TPTQVASHAQ KYYIRQSNKN RRRHRSTFFN IVPNLNSVPL LKLRFLNSPP PMIFTSTRIV  180
AEDGSPITIA LYASTNVRVI MDLPLEIFAL NADITEENLT TEEFNRNILL SSEENRPLLI  240
GDRTMKLKDG VGVISSDLAF TEDSSWTRSG KFRLGVKVTE GKVVEAITEA FTCIERPGPY  300
SDSEVCRLDN MTKHGVTESC LTGGNTSDQH KERRQLHIRG PRPSPLSVNK DSHQIKKPPK  360
KPAYQEVQYT AQEPRVIYKV SPKVVHTNTS DFKNLVERHT GISSGIFLEP GSCNGVSQAA  420
RLGATENASL RGEKEPARYE TDEMEEAADQ FEACAPGILS SSPAMLPTPS TDMFPPPVVI  480
SEFRTCRPDT FGASGYSNNM QDTELSIGSP PQCIDPSAIS PKDYDCGLVS TRVGSPTCKH  540
YDVVIRYKRG DISSEDFISH LRAALCRRGI SVHGDFDEVD TVPECRVLII LLTSTCVPSN  600
LLNSIEDQRK EPRVVYPIFC GISPSEMIAN SKYYYERFDL QDEPKQWQAA LQELTQIPGY  660
ILIDKSESEL IDEIVRDALK VLRSNDKEKM IGMDTQIDEV LSLLCIESPD IRSIGIWGTV  720
GIGKTAIAEE IFRRISVQYE TCVFLKDFHK QVEVKGHDAV REDFLSKVLE VDQHVIRISD  780
IKSSFLKSRL QRKRLLIVLD DVHDFRDLET FLGKLNYLGL GSRIIITSRN RHVFVQCKIN  840
HVYVVKPLDI SNSLLLLDRD TLLTTLSHEI YNTLSLELVK FSSGNPKVLQ FCSKPDIAWD  900
QLSQQVQKTS PIYIPGIFER CCCGLDEDER NIFLDIVCFF RKMDKDDVAM LLDGCGFSAH  960
IGFRSLVDKS LLTISQNMLD MLQFIQATGR EIVRQESADR PGDRSRLWDS EDIQNVFLND  1020
TGTSAIEGIF LDMSNLKLDA NPNIFDKMCN LRLFKFYFSK VIENHGVSLP QGLEYLPSKL  1080
RLLHWEHYPL SSLPQSFDPK NLVELNLPNS CVKKLWKGKK SVERLKKMRL SYSYQLTKIP  1140
RLLRAPNLEL LDLEGCSSLD CSNLESVPST VDLESLVVLN LSGCSKLENF PEISPNVKEL  1200
DLGGTMIQEI PSSIKNLVWL EKLELENNRH LVKLPTSICK LKHLETLNLS SCSSFEQFPD  1260
LSRKMKCLKS LDLSRTAIQE LPSSISYLTA LEELRFVECK SLVRLPDNAW SLRFKVEFRQ  1320
IDAEKFSKLW NRFGWLKKTQ QREFFTISNV NMVRHEIRAE LISVSKPQKH VELCRGSRRR  1380
FRGREQHLSE NNNWNYTEIN KKKKRPELLY VQYTYMSMTA DASGLKSFSE TLQPLPWKLR  1440
FVNSPPPLIF TFSNIKSEDG SPLAIELVHP STNARITMDL PLEIVALNAD VTEESLTTEE  1500
FNRNILLSIK EKRPLLTGDM NVTVMDGVGV IRGDLAFTEN SSWTRSRKFR LGAKVAGGGA  1560
MEAISRAYAC RDRPGRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676754132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662164.10.0probable WRKY transcription factor 19 isoform X1
TrEMBLA0A1J3GF220.0A0A1J3GF22_NOCCA; Putative WRKY transcription factor 19
STRINGBra029432.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.30.0WRKY family protein