PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676753378 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | B3 | ||||||||
Protein Properties | Length: 1319aa MW: 146705 Da PI: 6.6137 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.5e-17 | 6 | 94 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk++ ++++s+ + +p ++ +e ++ +kt l+ + g W+v + k+++++++++GW +Fv++ +L++gD+++F +dg+++f +v+++ 676753378 6 FFKIF--LSHFSSQSMLIPPSYYDEL--PPLLPKTALLQGSGGCFWTVAM--MKRRDEVYFGQGWAKFVEDTRLRDGDVLTFIYDGSRNF--KVSIY 94 78888..89999999*******9766..577999****************..9*******************************997777..77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.14 | 4 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-19 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.10E-17 | 4 | 94 | No hit | No description |
SuperFamily | SSF101936 | 8.44E-22 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.1E-15 | 6 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-14 | 6 | 93 | IPR003340 | B3 DNA binding domain |
Pfam | PF03398 | 2.5E-54 | 357 | 520 | IPR005061 | Vacuolar protein sorting-associated protein Ist1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015031 | Biological Process | protein transport | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1319 aa Download sequence Send to blast |
MVLPRFFKIF LSHFSSQSML IPPSYYDELP PLLPKTALLQ GSGGCFWTVA MMKRRDEVYF 60 GQGWAKFVED TRLRDGDVLT FIYDGSRNFK VSIYGSGGCK EARVVAQVVA IDDDKDDSVS 120 HLTSKDTNTS SEPEMANTVP NTNTRNKGKK KVLEDSDESF ASEDANSSDT SPEPEMAKRV 180 PRTRSKGKEK IAVEDSDDSF ASEDSNSRDS SYYPPTLSYM TPKVANPRRK GTSRSANSVV 240 GSTSYRPRPM ARKSESVIKN PEAYLDDPNN VFFETVVKSR TYELLIHAQV VRDYCLKFQN 300 FVDYIDNHEN GKLQAETTNW HDQRVCIKKW NRICKRDGFK KGDHKVLHRS FKPAKCKITL 360 QMATSRLKIL KNKKDTQIKQ LRRELAHLLE SGQTQTAKIR VEHVVREEKT VAAYELVGIY 420 CELIVARLGV IDSQKTCPND LKEAVGSVLY ASQRLSDVSE LADVVKHFTA KYGKDFVSAA 480 VGLQPDSGVS RLLVDKLSVK APDGPTKIRI MKEIATEHNV AWEAESLVES DPKETVLLSG 540 ASSSQSVSGL NTNSSRIPNN QPPDVQAPAT LNPSQPSYAT DGRSSSRTAS TDFNTGKTAD 600 YYHQDPRPSG DRTDGGEYRP PNPSYADPSP WETEFVDATT AARAAAESAE RASFAARAAA 660 ELSSKERLRT AMQSSTESRN SSSHDNIRTE PSHKHNSNSN VQSGGFAKEE TLRSSHRHED 720 QSTTRAELSE KNAVEQLENA SWGRGHSRDN SLEMKPNDSF AKIAREKKQP SVDNINVSCS 780 DDVQLRKQSS RVSSDSDTSY FSEDNNVTSS DRNDVPSIFE DNRFQGTVKD TENLHGHDVA 840 PAFDDHSSFF DKPQFDTEDA YGDEPEHGLG FSLLGSSSKT PDHMPSEINS WSFKGHKSPG 900 QPSSASTSQV HEREKPSSPL FDDGPTSPPA SVHEPEPSAK FDDYDRDSES EEDDVRAKGI 960 LSGRVEEKPK LTSHKSSMSE VPDDLGRYFF PSDTEAQEDD SRPHEENSDA ETPTGPRLGP 1020 LTDGLNNEKT LPPCEMSSQR DKTLSKSVKE HVQTEVDLSR SSSSQTVSPS SIRKDLYTQK 1080 ANDPKKRPSY IPPYSSSSDD ETEVELLKRV SIRNQDKITE SRPRPTHPHS RVTNEDSKEG 1140 IPTRASIRSQ EKRTYKTTPA VTSYFHSFSS DDEDDEKDFR RDVSGVQTKP SISISRRTKG 1200 QERKPSLVTT KTDKVSQDQE SRPKLIDETK PLAKKQESVS SSSLPKTVKV SHDQESPPKL 1260 GHRAKPLADQ ERPASSSSSL PKPVTSPEPE TQSKQKASHV HPKLPDYDDI FAKLGALRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3jc1_Bc | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Be | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bg | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bi | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bk | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bm | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bo | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bq | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bs | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bu | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Bw | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_By | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Ca | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Cc | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Ce | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Cg | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Ci | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Ck | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Cm | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
3jc1_Co | 3e-29 | 351 | 531 | 1 | 181 | Increased Sodium Tolerance 1 (IST1) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676753378 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024005181.1 | 0.0 | dentin sialophosphoprotein | ||||
TrEMBL | R0GUH2 | 0.0 | R0GUH2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0495s0032.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 3e-75 | B3 family protein |