PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753378
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 1319aa    MW: 146705 Da    PI: 6.6137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753378genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.5e-17694197
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
               ffk++   ++++s+ + +p ++ +e   ++  +kt  l+ + g  W+v +   k+++++++++GW +Fv++ +L++gD+++F +dg+++f  +v+++
  676753378  6 FFKIF--LSHFSSQSMLIPPSYYDEL--PPLLPKTALLQGSGGCFWTVAM--MKRRDEVYFGQGWAKFVEDTRLRDGDVLTFIYDGSRNF--KVSIY 94
               78888..89999999*******9766..577999****************..9*******************************997777..77665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.14497IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19498IPR015300DNA-binding pseudobarrel domain
CDDcd100177.10E-17494No hitNo description
SuperFamilySSF1019368.44E-22499IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-15697IPR003340B3 DNA binding domain
PfamPF023621.9E-14693IPR003340B3 DNA binding domain
PfamPF033982.5E-54357520IPR005061Vacuolar protein sorting-associated protein Ist1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015031Biological Processprotein transport
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1319 aa     Download sequence    Send to blast
MVLPRFFKIF LSHFSSQSML IPPSYYDELP PLLPKTALLQ GSGGCFWTVA MMKRRDEVYF  60
GQGWAKFVED TRLRDGDVLT FIYDGSRNFK VSIYGSGGCK EARVVAQVVA IDDDKDDSVS  120
HLTSKDTNTS SEPEMANTVP NTNTRNKGKK KVLEDSDESF ASEDANSSDT SPEPEMAKRV  180
PRTRSKGKEK IAVEDSDDSF ASEDSNSRDS SYYPPTLSYM TPKVANPRRK GTSRSANSVV  240
GSTSYRPRPM ARKSESVIKN PEAYLDDPNN VFFETVVKSR TYELLIHAQV VRDYCLKFQN  300
FVDYIDNHEN GKLQAETTNW HDQRVCIKKW NRICKRDGFK KGDHKVLHRS FKPAKCKITL  360
QMATSRLKIL KNKKDTQIKQ LRRELAHLLE SGQTQTAKIR VEHVVREEKT VAAYELVGIY  420
CELIVARLGV IDSQKTCPND LKEAVGSVLY ASQRLSDVSE LADVVKHFTA KYGKDFVSAA  480
VGLQPDSGVS RLLVDKLSVK APDGPTKIRI MKEIATEHNV AWEAESLVES DPKETVLLSG  540
ASSSQSVSGL NTNSSRIPNN QPPDVQAPAT LNPSQPSYAT DGRSSSRTAS TDFNTGKTAD  600
YYHQDPRPSG DRTDGGEYRP PNPSYADPSP WETEFVDATT AARAAAESAE RASFAARAAA  660
ELSSKERLRT AMQSSTESRN SSSHDNIRTE PSHKHNSNSN VQSGGFAKEE TLRSSHRHED  720
QSTTRAELSE KNAVEQLENA SWGRGHSRDN SLEMKPNDSF AKIAREKKQP SVDNINVSCS  780
DDVQLRKQSS RVSSDSDTSY FSEDNNVTSS DRNDVPSIFE DNRFQGTVKD TENLHGHDVA  840
PAFDDHSSFF DKPQFDTEDA YGDEPEHGLG FSLLGSSSKT PDHMPSEINS WSFKGHKSPG  900
QPSSASTSQV HEREKPSSPL FDDGPTSPPA SVHEPEPSAK FDDYDRDSES EEDDVRAKGI  960
LSGRVEEKPK LTSHKSSMSE VPDDLGRYFF PSDTEAQEDD SRPHEENSDA ETPTGPRLGP  1020
LTDGLNNEKT LPPCEMSSQR DKTLSKSVKE HVQTEVDLSR SSSSQTVSPS SIRKDLYTQK  1080
ANDPKKRPSY IPPYSSSSDD ETEVELLKRV SIRNQDKITE SRPRPTHPHS RVTNEDSKEG  1140
IPTRASIRSQ EKRTYKTTPA VTSYFHSFSS DDEDDEKDFR RDVSGVQTKP SISISRRTKG  1200
QERKPSLVTT KTDKVSQDQE SRPKLIDETK PLAKKQESVS SSSLPKTVKV SHDQESPPKL  1260
GHRAKPLADQ ERPASSSSSL PKPVTSPEPE TQSKQKASHV HPKLPDYDDI FAKLGALRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jc1_Bc3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Be3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bg3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bi3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bk3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bm3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bo3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bq3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bs3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bu3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Bw3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_By3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Ca3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Cc3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Ce3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Cg3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Ci3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Ck3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Cm3e-293515311181Increased Sodium Tolerance 1 (IST1)
3jc1_Co3e-293515311181Increased Sodium Tolerance 1 (IST1)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005181.10.0dentin sialophosphoprotein
TrEMBLR0GUH20.0R0GUH2_9BRAS; Uncharacterized protein
STRINGCagra.0495s0032.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.13e-75B3 family protein