PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752808
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 600aa    MW: 65241.2 Da    PI: 10.0342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752808genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.6e-15234321186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +  ++  + +s++++fd+l+
  676752808 234 CWSERATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKTPKTDIQCKNRIDTVKKKYKQEKLRIANG--GGRSRWVFFDKLD 321
                7*************************************85444455566778******************99997..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055643.2E-6770IPR008406Dormancy/auxin associated protein
PfamPF138371.5E-24232323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGFLHRLWDE TVAGPAPENG IGKLRNHISG ENVTRNGHRK LMVDPGRVPD SPVGSNIPGS  60
PLTPGTPSET HATSLNACDC YLLRGQVIWR HLLLIRSIIP RVPPNSPTPS PSRYPPTRDN  120
KPNPNPISFS RHHPLTRSGE ITSMEDDEDT RSHASPTGSD SPDPSSSPAT GGVTVTVAST  180
GPPSYSLTPP ACSSQQKEDP DALALALLPI QSSGGVGGSS SNGKPSGGGG REDCWSERAT  240
AVLIDAWGER YLELSRGNLK QKHWKEVAEI VSSREDYGKT PKTDIQCKNR IDTVKKKYKQ  300
EKLRIANGGG RSRWVFFDKL DRLIGSTAKI PAAPPAISGG GSPGGLHKIP MGIPMGSRSN  360
IYHQQAKAAT STPPFDRLIG ATARVTAASF GSGGGGGGGG GSVNVPMGIP MSSRVNAFGQ  420
QARTLPHQRQ QGRTLPQQRQ GMMVKRCESK QQRWRFSKRN ATDSESESDA PMSDDDSGDS  480
LPPPPLSKRM KTEEKKKREC DGGGNKWREL TRAIMRFGEA YEQTENAKLQ QVVEMEKERM  540
KFLKELELQR MEFFVKTQLE ISELKEHGRR MGNTSNDHHS CKNNSKNSMN AIVNNNDVGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391401SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188034.10.0sequence-specific DNA binding transcription factor
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A178V8Z70.0A0A178V8Z7_ARATH; ASIL2
STRINGAT3G14180.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-178sequence-specific DNA binding transcription factors