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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676752746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NF-YA | ||||||||
Protein Properties | Length: 372aa MW: 41418.5 Da PI: 9.8248 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.6 | 1.6e-31 | 176 | 232 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl ++ rkpylheSRh hA++R+RgsgGrF 676752746 176 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IRVRKPYLHESRHLHAVKRARGSGGRF 232 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-35 | 174 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.89 | 175 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.9E-26 | 177 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-22 | 178 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 180 | 200 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.3E-22 | 209 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MQEFCSKVSL SCPATSWGNS AFTNSHVQGS SSSMTDNNTL SLTMEMMSTH FPGMKQNGFP 60 LQDHDSSSTQ STGGGDSSGE VASLGEHNNR YGHNHLSGYK ENGGSLSGSH PESILSKVSQ 120 NSAVPATIEA SWPLHGHETP HFNGFMSFPY ASQHTVQHHG GFIPSRMLLP HNIPENEPIF 180 VNAKQYQAIL RRRQHRAKLE AQNKLIRVRK PYLHESRHLH AVKRARGSGG RFLNTKKLQE 240 PKSPQSHFFK NPQGKVLQRE ISGVGVGSSV SKTSCSDLTG NNNDMFQENT QFRFSDDYTS 300 ENRHRIATRA ALVPCLQCVL LLAKVIMAWL ETCHFVYGQS LQKQSPRQFN KKLDNLLMEA 360 ALNGWQGIKR FC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 177 | 241 | 3 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676752746 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493613 | 3e-96 | AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015185.1 | 1e-167 | nuclear transcription factor Y subunit A-6 isoform X3 | ||||
Swissprot | Q9LVJ7 | 1e-127 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | V4NPX0 | 1e-150 | V4NPX0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407138.1 | 1e-151 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14733 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-119 | nuclear factor Y, subunit A6 |
Publications ? help Back to Top | |||
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