PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 461aa MW: 50983.5 Da PI: 5.4904

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752710	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.3	2.6e-31	238	292	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl 676752710 238 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 292 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.486	235	295	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-29	236	293	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-16	237	292	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-24	238	293	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-8	240	291	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-22	328	375	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MNSHRPVSTA QDQCNKGIRQ ACSSSMSPAH NFLHVQPETR KSPFIRSQSP DSPGQLWPKN 60 SSQGTFSRSS TFCTDLYLSS SSTSETQKHL GNSLPFLPDP SSAYSHSASG VESARSPSIF 120 SEDLGHPFDG DNSGSLVKDF FDLSGDACSD RGFHDVDCSN DSYCLSDQME LQFLSDELEL 180 AITDRAETPR LDEIYETPLA SSNPVTGLSP SQRCVAGAMS VDAVSSHPTP ESAAANHKPR 240 MRWTPELHES FLKSVDKLEG PEKATPKAVL KLMNVEGLTI YHVKSHLQKY RLAKYMPEKK 300 EEKKSVNSEE KKLALSNSEA DEKKRGAIQL TEALRMQMEV QKQLHEQLEV QRVLQLRIEE 360 HAKYLEKMLE EQRKTGRLIS SSSQTLLSPS DDSIPDSENM SKTEVSLPHP SSPAKNTASE 420 TEGTLPQPSS PAASETEGDK CESPQKRRKL ENNVESEDPE K

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MNSHRPVSTA QDQCNKGIRQ ACSSSMSPAH NFLHVQPETR KSPFIRSQSP DSPGQLWPKN  60
SSQGTFSRSS TFCTDLYLSS SSTSETQKHL GNSLPFLPDP SSAYSHSASG VESARSPSIF  120
SEDLGHPFDG DNSGSLVKDF FDLSGDACSD RGFHDVDCSN DSYCLSDQME LQFLSDELEL  180
AITDRAETPR LDEIYETPLA SSNPVTGLSP SQRCVAGAMS VDAVSSHPTP ESAAANHKPR  240
MRWTPELHES FLKSVDKLEG PEKATPKAVL KLMNVEGLTI YHVKSHLQKY RLAKYMPEKK  300
EEKKSVNSEE KKLALSNSEA DEKKRGAIQL TEALRMQMEV QKQLHEQLEV QRVLQLRIEE  360
HAKYLEKMLE EQRKTGRLIS SSSQTLLSPS DDSIPDSENM SKTEVSLPHP SSPAKNTASE  420
TEGTLPQPSS PAASETEGDK CESPQKRRKL ENNVESEDPE K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-24	238	295	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752710

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050889	0.0	AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBank	AY096674	0.0	AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297672.1	0.0	myb family transcription factor PHL6
Refseq	XP_020886314.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	D7L0M9	0.0	D7L0M9_ARALL; Uncharacterized protein
TrEMBL	R0HYE1	0.0	R0HYE1_9BRAS; Uncharacterized protein
STRING	fgenesh2_kg.3__1373__AT3G13040.1	0.0	(Arabidopsis lyrata)
STRING	XP_006297672.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]