PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676752358

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 268aa MW: 30294.2 Da PI: 9.5295

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676752358	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.9	3.2e-19	15	64	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++ ++s +++ R+++i+ KA LS+LC++ v+vi+++++g+l+++++ 676752358 15 SSTSNSLTATSLRDRLKTIFRKACQLSILCQVAVCVIYYGPNGELKTWPK 64 5667788899**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.31E-12	24	92	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	8.578	24	66	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-10	29	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MMSSSSSSSS SSSSSSTSNS LTATSLRDRL KTIFRKACQL SILCQVAVCV IYYGPNGELK 60 TWPKEREIVK DMASRYNAAT KRKNSLNLNQ VLELKKVDDK KDLKKKKKKM KTKRESENVK 120 YPDWYPQQQQ RLCGFDQKIT NGNFQHPCVS NTQDHQALLS GQESGVKNHL MQQQELYGSH 180 QNMCMMNNIT NSNVLRHPFL TNTVPEEFCS GLQKNPDGDM VGRTGGSQDF PNLCSAYDES 240 RLIQTSSRPS LHQPLPNNYL LPDNSRCL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676752358

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130508.1	4e-64	PREDICTED: agamous-like MADS-box protein AGL75
Refseq	XP_022565274.1	4e-64	agamous-like MADS-box protein AGL75
TrEMBL	A0A078H8Y6	1e-80	A0A078H8Y6_BRANA; BnaC02g43730D protein
STRING	Bra031864.1-P	2e-63	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11250.1	1e-35	AGAMOUS-like 52