PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676752298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 42457.5 Da PI: 7.1023 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.6 | 0.00013 | 255 | 299 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er R +ri + + L +llP+ + ++ iL + v+++k Lq 676752298 255 TTERERKQRIDDNIKALAKLLPHE----VEENNPELILNEIVDHVKLLQ 299 57*********************9....455666668888888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-6 | 248 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-6 | 255 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MQQFPLFLVS DKLFRVFLCS RFMGFNSVFQ SLTELFPQID ARILTTVAMD HPTNADEAAA 60 VVISEVVPLF PQHFTPKLDH LPHCKVEPDM QTDDARLALS QWLHPSQLPR SYLALLNEEE 120 STPDVKPPLD YAVNKLLLTS ARGGFQTIHS PSKNAANKTA SSLVKPSIHV QTRTNNEQVS 180 RIIIYLHLSC QGSSSRVGRS TRKGPLPWSQ NYSQKLRSWK KRSINDDNRD SSHLHGQWKD 240 VPSKQSNKNQ CKAYTTERER KQRIDDNIKA LAKLLPHEVE ENNPELILNE IVDHVKLLQL 300 QMKELSLSRL GGEPTSHPMT LIEGFGHYIH HEEMMTKPLE EMMEDLLAND PDAAASLLES 360 KGLYLMPLSS VQGLC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676752298 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625672.1 | 1e-171 | PREDICTED: uncharacterized protein LOC106331805 isoform X1 | ||||
TrEMBL | A0A0D3BEW2 | 1e-170 | A0A0D3BEW2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g100520.1 | 1e-170 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12956 | 16 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 1e-10 | LJRHL1-like 2 |