PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752188
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 964aa    MW: 102016 Da    PI: 8.5742
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752188genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  676752188 61 FVCEICNKGFQRDQNLQLHRRGH 83
               89******************988 PP
2zf-C2H210.80.0015137159123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H + +
  676752188 137 WKCEKCSKKYAVQSDWKAHSKIC 159
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.79E-66083No hitNo description
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM0035584102132IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.79E-6132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
SMARTSM003326.7E-6711959IPR001932PPM-type phosphatase domain
PROSITE profilePS5174626.673724961IPR001932PPM-type phosphatase domain
SuperFamilySSF816063.92E-29725958IPR001932PPM-type phosphatase domain
SMARTSM003312.5E-8728961IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.104.5E-18736958IPR001932PPM-type phosphatase domain
PfamPF072285.9E-8748960IPR001932PPM-type phosphatase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0003824Molecular Functioncatalytic activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MPVDLDNSST VSGDASVSST GNQNPPPKPA GKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK VYVCPVAGCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYRCDCGT LFSRRDSFIT  180
HRAFCDALAE ESAKNHTQCK KLYPETVIRK HQPHPEPELK SPGAVDSHPV TPPPPHSPPS  240
VALAPAPALS AETEPAKIVS SSVLPIRSSS ESPQNNPPEV LMEEAPRTIG FNVSSSGLSN  300
DHSNNNNGVY AGVFASSTAS PSLYDSSTPS PSLFAPSSSM EPISLCLSTN PSLFGAAIQD  360
PPHFLTPLPP QPAMSATALL QKAAQMGSTG SGGSLLRGLG IVSTTSSSVE LSNHDSASLA  420
PGLALGLPCS SGGSGSGLKE LMMGNSSVFG PKQTTLDFLG LGRAVGNGGN PGGGLSALLT  480
SIGGGGGIDV FGTGEFSGKD IGRNQLTREQ TDKPIAKIPI LPSTADEIYP RASGCRLTKL  540
MSATAISRLN PVSQFGFQRI VAGKSKSFFS ISNQRRLFSD SSRFTLSGRR RAMATSGSLP  600
VFGDACLDDL FSTCANGLDF TKKRSTGGVA LFASDFPVAS MRLGKREQLK NRLVCHYSVI  660
DPLEKTRALF GSFSKSIHTS SSSSSPSCFS VGPAHELSSS QDSELSGSPP TTSSLKCLKL  720
VSGSYYLPHP EKVATGGEDA HFICDEEQAI GVADGVGGWA EVGVNAGLFS RELMSFSVSA  780
IREQTKGSSI DPLMVLEKAH SQTRAKGSST ACIIALTEKG LHAINLGDSG FTVVRDGTTV  840
FQSPVQQHGF NFTYQLESGN GGDMPHSGQV FMIDVESGDV IVAGTDGVYD NLYNEEITGV  900
VVSSVRAGLD PKATAQKIAD LARARAVDRK RQSPFAAAAQ EAGFRYYGGK LDDITAVVSY  960
VTPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ae9_A1e-407209612250Probable protein phosphatase 2C 1
6ae9_B1e-407209612250Probable protein phosphatase 2C 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQRSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534900.0AK353490.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-46-I13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280348.10.0protein indeterminate-domain 1
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLR0EWK50.0R0EWK5_9BRAS; Uncharacterized protein
STRINGCagra.2007s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]