PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752028
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 733aa    MW: 81540.4 Da    PI: 7.9714
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752028genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.31.8e-94314202373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilkfshlta 98 
                ++lLl+cA+a++s+d++laq++++ l++l+spdgd++qRla+ +++AL +r a +++ l+   ++s++s ++ + +++++ +l  f+++ P+++f++++a
  676752028  31 EQLLLHCANAIESNDATLAQQIIWVLNNLVSPDGDSTQRLASSLLRALISRAATKSPALAFLSAASAASVSQkTLHRFSVIELaaFVDLIPWHRFGFIAA 130
                79***************************************************98887764444444433333555555555577*************** PP

       GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledl 189
                N aIl+av+g + vHi+D+++++++Q p+L++++a++    ++pp l++T+v ++++       ++ee+g +L +fA++ ++++ef+++   +++ l++l
  676752028 131 NAAILDAVKGYSSVHIVDLSLTHCMQIPTLIDSMATKLnkdQPPPLLKLTVVLAESPPpplLGISYEELGLKLVNFATTRNIEMEFRIIsssYSDGLSSL 230
                ***********************************9886768899*******9988778888999***********************966555566666 PP

       GRAS 190 eleeLrvkp...gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                 +e+Lr++p   +Eal+Vn++++lh++++e++s++s  r+ +Lk +++l+P++v+++e++ad +s++F  r+ + ++y++  +d+ ++ l r s +r+++
  676752028 231 -IEQLRLDPlvcNEALVVNCHMALHYIPHETLSSSSpSRSYFLKELRDLNPTMVTLIEEDADFTSNNFTSRLRSLFNYMWIPYDTADTFLTRGSVQRRWY 329
                .9********************************9988999*********************************************************** PP

       GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve...eesgslvlgWkdrpLvsvSaW 373
                E+  +g++i nvva+egaer+er e +++W er++ea F  v +s+ +a+++k++l++++ ++g + +   ++ + +vl+Wk++++v++SaW
  676752028 330 EAD-IGWRIDNVVAKEGAERVERLEPKSRWFERMREASFAGVGFSQAVATEVKTMLEEHAaGWGLKKDvddDDVERFVLTWKGHSVVFASAW 420
                ***.********************************************************888876664434467889************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.7144397IPR005202Transcription factor GRAS
PfamPF035146.2E-9231420IPR005202Transcription factor GRAS
PfamPF127671.6E-39433676IPR024738Transcriptional coactivator Hfi1/Transcriptional adapter 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0070461Cellular ComponentSAGA-type complex
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MNKAMILNLT RPVWPGFSSS KSICGDANCM EQLLLHCANA IESNDATLAQ QIIWVLNNLV  60
SPDGDSTQRL ASSLLRALIS RAATKSPALA FLSAASAASV SQKTLHRFSV IELAAFVDLI  120
PWHRFGFIAA NAAILDAVKG YSSVHIVDLS LTHCMQIPTL IDSMATKLNK DQPPPLLKLT  180
VVLAESPPPP LLGISYEELG LKLVNFATTR NIEMEFRIIS SSYSDGLSSL IEQLRLDPLV  240
CNEALVVNCH MALHYIPHET LSSSSPSRSY FLKELRDLNP TMVTLIEEDA DFTSNNFTSR  300
LRSLFNYMWI PYDTADTFLT RGSVQRRWYE ADIGWRIDNV VAKEGAERVE RLEPKSRWFE  360
RMREASFAGV GFSQAVATEV KTMLEEHAAG WGLKKDVDDD DVERFVLTWK GHSVVFASAW  420
GTQMPTGQHH IVRTDTLELK SQIEKKIGRA KTESYLNLLS KFLSLKISKS DFDKLIVATV  480
KKENIGLHNA LLRGIIKNVC LSKTSPLVKK GAAEEEGTEE RNKKKQQLNG GFQTSLSFKS  540
LCNDLPKSPR KGRTHRRVNK DCNGSKGKSQ ITEVVSSSCK QQWSMEDGEE VDQLIRCWRS  600
QPIEPPFGVH LRDVIKRRRH IGTCYSSREL PDSVSLKKKL QDMEEQGLEV SVGFANSLNA  660
GLNAFLQRLI TPCLEFAASR SSSGGQVCSS SASMVDFQVA MELNPSILGE DWSTKLEKIR  720
LAAPDLPADF QTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-491542018418Protein SHORT-ROOT
5b3h_E2e-491542018418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596276.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_013690820.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078FIM70.0A0A078FIM7_BRANA; BnaC07g15890D protein
TrEMBLA0A0D3D8470.0A0A0D3D847_BRAOL; Uncharacterized protein
STRINGBo7g063640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-168GRAS family protein