PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676751668

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 401aa MW: 46205.9 Da PI: 6.9437

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676751668	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.2	3.4e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++s r+vt++kRr gilKKA ELS+LCd+++ +++fs++g+ 676751668 9 KRLESSSSRKVTYTKRRSGILKKARELSILCDIDIVLLMFSPSGR 53 689***************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.053	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-27	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-23	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00120	5.06E-23	2	54	No hit	No description
PRINTS	PR00404	1.3E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.3E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MGRVKVMIKR LESSSSRKVT YTKRRSGILK KARELSILCD IDIVLLMFSP SGRPTILHGD 60 HRCVGDVIAK FAQLTPQERT KRKLESLEAL KKTFMKLDHD VNIHEFLGAR NQNIEGLTNQ 120 VAFFQAQVLE CHRRLSCWAN IARIENIEHL RNLEESLRKS IDRIQVHKFQ NEISPPLSIK 180 DIQESNSLSW LPSNNNQQMI IPGDSSFIPH GEMADREIAS IPVYSSFFES GNQEDQICNL 240 EQQFDHLRQE GNVLGEKYSY STQFGMQEEK EFEPAFELNV QQDPTMYPIS NSVHFPDQSV 300 FSATDHPHHQ TWISDSTCCS NSAFSHSENN QRPDWLERGT EQPINCETKG QQLNQINHPR 360 RNEIDSKIRT RTRRLMNVEE INDYPGSGAN NRHTRPYCPG C

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MGRVKVMIKR LESSSSRKVT YTKRRSGILK KARELSILCD IDIVLLMFSP SGRPTILHGD  60
HRCVGDVIAK FAQLTPQERT KRKLESLEAL KKTFMKLDHD VNIHEFLGAR NQNIEGLTNQ  120
VAFFQAQVLE CHRRLSCWAN IARIENIEHL RNLEESLRKS IDRIQVHKFQ NEISPPLSIK  180
DIQESNSLSW LPSNNNQQMI IPGDSSFIPH GEMADREIAS IPVYSSFFES GNQEDQICNL  240
EQQFDHLRQE GNVLGEKYSY STQFGMQEEK EFEPAFELNV QQDPTMYPIS NSVHFPDQSV  300
FSATDHPHHQ TWISDSTCCS NSAFSHSENN QRPDWLERGT EQPINCETKG QQLNQINHPR  360
RNEIDSKIRT RTRRLMNVEE INDYPGSGAN NRHTRPYCPG C

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676751668

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428431.1	1e-159	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-128	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A3P5YL32	1e-129	A0A3P5YL32_BRACM; Uncharacterized protein
STRING	XP_010428430.1	1e-156	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-122	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]