PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751516
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 414aa    MW: 46870.6 Da    PI: 7.6239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751516genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000652143123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C++Cg s s k++ ++Hi++H
  676751516 21 YLCQYCGISRSKKYLITSHINSH 43
               56********************6 PP
2zf-C2H220.11.7e-066890123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ Cg  F+ + +Lk+H+++H
  676751516 68 HTCQECGAEFKKPAHLKQHMQSH 90
               79*******************99 PP
3zf-C2H216.52.4e-05117141123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + C   dC+ s++rk++L+rH+ tH
  676751516 117 FACYvdDCTSSYRRKDHLNRHLLTH 141
                678888*****************99 PP
4zf-C2H223.91.1e-07218242123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cgk F+ +s+L++H+ +H
  676751516 218 FVCKevGCGKAFKYPSQLQKHQDSH 242
                89********************998 PP
5zf-C2H220.71.1e-06308333123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                +kC+   C+ +Fs  snL++H++  H
  676751516 308 FKCEveGCSSTFSKASNLQKHMKAvH 333
                89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-61990No hitNo description
SMARTSM00355252143IPR015880Zinc finger, C2H2-like
SMARTSM003550.00156890IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6146895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8114143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-6114143No hitNo description
SMARTSM003550.33117141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681117146IPR007087Zinc finger, C2H2
PROSITE patternPS000280119141IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-5144172No hitNo description
SMARTSM003550.66146171IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203146176IPR007087Zinc finger, C2H2
PROSITE patternPS000280148171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-8212242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-6213244No hitNo description
PfamPF000961.8E-5218242IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.51218247IPR007087Zinc finger, C2H2
SMARTSM003557.6E-4218242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220242IPR007087Zinc finger, C2H2
SMARTSM003550.97250275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252275IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-4252273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522278299IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.84E-9289343No hitNo description
Gene3DG3DSA:3.30.160.601.2E-8289330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.0E-4308333IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152308338IPR007087Zinc finger, C2H2
PROSITE patternPS000280310333IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4332360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558339365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280341365IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAEEAANIDA KTTKTKDIRN YLCQYCGISR SKKYLITSHI NSHHKMEVEE ERDEEACEVA  60
EETSCGKHTC QECGAEFKKP AHLKQHMQSH SLEVGRPPEK LQQFLIVVHF TVVQRPFACY  120
VDDCTSSYRR KDHLNRHLLT HKGKLFKCPM DNCKSEFSVH GNVSRHVKQF HSNGDGNKGD  180
TGNGDSNKDE TSTGNTDKAD VGNGDSQPSE SSTGLKKFVC KEVGCGKAFK YPSQLQKHQD  240
SHVELDSVEA FCSEPGCMKY FTNEECLKAH IRSCHQHINC EICGSKHLKK NIKRHLRTHE  300
EDSSAGEFKC EVEGCSSTFS KASNLQKHMK AVHEDIRPFA CGFPGCGMRF AYKHVRNNHE  360
NSGNHIYTCG DFVEADEDFT SRPRGGLKRK QVTAEMLIRK RVMLPQYDSE HETC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C5e-131936832309Zinc finger protein 568
5wjq_D3e-13193687284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301795.10.0transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLR0IDC60.0R0IDC6_9BRAS; Uncharacterized protein
STRINGBostr.10273s0148.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA