PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751274
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 308aa    MW: 33403.8 Da    PI: 8.4791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751274genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT +E++ l+ +++++G g Wk I r         +R+  ++k++w+++
        676751274  5 KLKWTGDEEDALLAGIAKHGAGKWKNILRDPEfadqlSNRSNIDLKDKWRNL 56
                     689**********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.41162IPR017930Myb domain
SuperFamilySSF466898.97E-15363IPR009057Homeodomain-like
SMARTSM007172.7E-6459IPR001005SANT/Myb domain
PfamPF002498.4E-7556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-12556IPR009057Homeodomain-like
CDDcd116601.54E-19756No hitNo description
SuperFamilySSF467852.01E-12127206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.7E-15128193IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.1E-10129204IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.431130204IPR005818Linker histone H1/H5, domain H15
PfamPF005382.1E-8132202IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGNQKLKWTG DEEDALLAGI AKHGAGKWKN ILRDPEFADQ LSNRSNIDLK DKWRNLSVAP  60
GTQCSKDKAR PIKLKEEGVT LAVAPSAASA TTTPPPNANS SSSPAASLPR SASSEFSVDN  120
GSNFVLDTKN APRYDGMIFE ALSALTDANG SDVGSIFSFI EPRHAVPPNF RRVLSSRLRR  180
LAAQGKLSKV SNSKPLQNFY KLPDRSETIR APAPKLKEPN TKPRQSNSHP PAVSQEMIDE  240
AAITAACKVV EAENKINVAK VAVEELEKTT KLAEETDLLL ELAKEIHERC KTETCPCSLI  300
LSFSLEAS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895072e-65AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896072e-65AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008799.11e-162telomere repeat-binding factor 5 isoform X2
SwissprotF4IEY41e-120TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLV4JRK81e-155V4JRK8_EUTSA; Uncharacterized protein
TrEMBLV4K9Z41e-155V4K9Z4_EUTSA; Uncharacterized protein
STRINGXP_006390624.11e-156(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.15e-97MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]