PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751120
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 389aa    MW: 43143.9 Da    PI: 8.1754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-11124147326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 e C+ f+r+G C++Gd C FaHg
  676751120 124 GEVCPEFRRGGDCSRGDDCEFAHG 147
                689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.535121149IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6121148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6121151IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8125147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-6125149IPR000571Zinc finger, CCCH-type
SMARTSM003562.5157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDVVRPTVEI PPRKLLLSSK SFPAESSPRS SPRKHNWNNK SNKIAISEHE EDSFNEDNNN  60
NKDTKEYCYD SDTDDPYASD HFRMFEFKIR RCTRSRSHDW TDCPFAHPGE KARRRDPRRF  120
QYSGEVCPEF RRGGDCSRGD DCEFAHGVFE CWLHPIRYRT EACKDGKHCK RKVCFFAHSP  180
RQLRVLPPEN VSGNSASAPA KSPCCLFCSS SPTSTLLGNL SHLSRSPSLS PPLSPAHKAA  240
AFSRLRNRAA SAVSAAAATG SVNYKDVLSE LVNSLDSISL AEALQVTSSS PVTTPVSAAA  300
AAFASSCGLN NQRLNIQQQQ SSPLQFALSP STPSYLTNSP RANYFSDDFT PRQRQMKDFT  360
TVAAVRDRTS FEDGSCGDPD LGWVNDLLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418203.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA10.0C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLV4MW890.0V4MW89_EUTSA; Uncharacterized protein
STRINGXP_006418203.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-180C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]