PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676750788
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 669aa    MW: 74700.8 Da    PI: 8.5205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676750788genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12496543355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r h ++ErrRR+++ ++f  L +++P +     kK +Ka++L  +++Y+k+L+
  676750788 496 RDHIIAERRRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIKYLKHLE 543
                5699************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139662.8E-12174232IPR026960Reverse transcriptase zinc-binding domain
Gene3DG3DSA:3.30.420.101.7E-4283358IPR012337Ribonuclease H-like domain
SuperFamilySSF530981.9E-7284363IPR012337Ribonuclease H-like domain
PfamPF134561.7E-8287369No hitNo description
PROSITE profilePS5088815.72493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16496559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15497555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9497543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-11498547No hitNo description
SMARTSM003531.3E-12499548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MIIISNEGGM DKYLGMPETF GRRKKDVFTS IVNRIQQRAI SWPTKFLSWA VVSKSASHGW  60
SSIIEDKEVL KQGLGFGNGK DIHVFSSPWL STSASITPIG PPTLENQSMK VANLLDQESF  120
VWNLPKIRQH LPLYEDITRL LNPSKLGGED KLVWLMDKSG IYNTKSVDAT YLVIKTAPKV  180
RHFMWRIAVG ALPTGEALAR RDIQADTLCI HCKAPETITR LLWNYPFSRE FWKLAPFLLV  240
PQESPMTSEK QLLDAKEWES ANSLPPKVTA LTNTAQAILL SGLSVYTDGA WNEFSKEGSM  300
DWCFQSPNCT VVSKGSSARP FLASALVAEA LALKDALQVA ILAGVDQLQV YSDSSVLVLT  360
LCSGSDLNEI AAKRTLAPSF QIALSLMDIS CNSEFNQLQW QMMTNFPTPE EVNDILSLPS  420
LQTMEPQPYN HQSPVVTTLD PEATKHLKDR SYNINTTTNQ YSNGFGEYGV MRNLQPKRES  480
TLLAQRNMSR GESQARDHII AERRRREKLS QRFIALSTIV PGLKKTDKAS VLGGTIKYLK  540
HLEDRVRFLE EQANQKTIES VVYLKKSILS RAETEHDCIV LPEIEARLSG KNVLIRVHCE  600
KRKGVVEITM AEIEKLKLTV INSSAISFGS NSLHLTIISQ MGDGFNMTTK DVATNIKSSL  660
EAFINANIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1501506ERRRRE
2502507RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676750788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-50bHLH family protein