PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749924
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 719aa    MW: 81676.6 Da    PI: 5.0729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749924genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.87.3e-1063407162373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100
                ++lL+ cA+ +s+gd+  a+ lL ++++++sp gd+ qRla++f++AL+arl +s+ ++ ++   + ++++++ ++ l+++k++   sP++++ ++  N+
  676749924 340 RTLLTLCAQSISAGDKITADDLLRQIRKQCSPLGDASQRLAHFFANALEARLEGSSGTMIQSYyDSITSKKRTAAQILKSYKVYLSSSPFMTLIYFYSNK 439
                6799**************************************************5555555553777777788*************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +Il+a++ ++ +HiiDf+i +G+QWp ++q  a+ + gp +lRiTgv+ p++g   +e++e tg+rL+++++++gvpfe+n++++k++e+++++e++++p
  676749924 440 MILDAAKDASVLHIIDFGILYGFQWPMFIQHVAKSKTGPRKLRITGVELPQNGfrPTERIEDTGRRLTEYCKRFGVPFEYNAIASKNWETIRMDEFKIRP 539
                ****************************************************9******************************99*************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                +E+laVn vl+l++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F +rf eal +ysalfd++ ++l+re+ eri  E e+ gre++nv
  676749924 540 NEVLAVNTVLRLKNLRDVTPGEEDcPRDGFLKLIRDMKPDVFLSSTINGSFNAPFFTTRFKEALFHYSALFDMFGSTLSRENPERIHFEGEFYGREVMNV 639
                ****************9999999999************************************************************************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                +aceg +r+er et+++W+ r+++aGFk+ p++ + + + +  ++k +  + + ++e+s+++++gWk+r L+s S+W
  676749924 640 IACEGVDRVERPETYKQWQVRMMRAGFKQKPVEAELVGSFREKIKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 716
                **********************************************999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.774313696IPR005202Transcription factor GRAS
PfamPF035142.5E-103340716IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MESTFSGMVN GFEYYDVGFL PNPTPDLGFG VPSSSDFDLR TDHQPSVWVP ATHQDQDQYQ  60
YQYEYHNQYS PPADEIDSEN TLLKYVNQLL MEESLAEKQS MLYDSLALRQ TEEMLQQVIS  120
DSQAHQPSYI TPNSITSSSG SNGGDNYWGS NSNSSVGIET GAGTCTESDV LYDDPVVDSG  180
VVSFRGSNNM LRGFGQPANE ILVRSMFSDA DSVMQFKRGL EEASKFLPNT DQWIFNLEHE  240
GKEAVSVKEE KGFSGTSRPR KNHHQREEEE DDLEEARSSK QSAVTVEDGK LTEFFDKVLL  300
LDGECDPQVI EDGENVSSKP QVIKKEGGRA KKKSQAVDFR TLLTLCAQSI SAGDKITADD  360
LLRQIRKQCS PLGDASQRLA HFFANALEAR LEGSSGTMIQ SYYDSITSKK RTAAQILKSY  420
KVYLSSSPFM TLIYFYSNKM ILDAAKDASV LHIIDFGILY GFQWPMFIQH VAKSKTGPRK  480
LRITGVELPQ NGFRPTERIE DTGRRLTEYC KRFGVPFEYN AIASKNWETI RMDEFKIRPN  540
EVLAVNTVLR LKNLRDVTPG EEDCPRDGFL KLIRDMKPDV FLSSTINGSF NAPFFTTRFK  600
EALFHYSALF DMFGSTLSRE NPERIHFEGE FYGREVMNVI ACEGVDRVER PETYKQWQVR  660
MMRAGFKQKP VEAELVGSFR EKIKKWGYHK DFVLDEDSNW FLQGWKGRIL FSSSCWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-443397165374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417797.10.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLV4KEH50.0V4KEH5_EUTSA; Uncharacterized protein
STRINGXP_006417797.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein