PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749882
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 621aa    MW: 69306.1 Da    PI: 9.7394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749882genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07519568147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        676749882 519 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 568
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864514573IPR017930Myb domain
SMARTSM007177.0E-7518571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10519569IPR009057Homeodomain-like
CDDcd116601.19E-16520570No hitNo description
SuperFamilySSF466892.08E-15520601IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPPTP RAARSPRKSA FKKKSETNQI SSFDLLAAVA GKLLLESGGN  60
SSSSSNNASE DNNEDQYVAK KEPLYGGDQT MVEETNCDHI DDKNTERRFF VSEILQKTHE  120
SFNRSPSPPK DFHFGSTSGI TSDSSEKFGT QELAYEETKI DSGDCFRSET NDKRSIHCEP  180
ELSRNVVAED KHHIGSGFRK PIPQNPLVCS DDIDLLSGRE NDDDENFSAR YTTKSFRSTL  240
RIGDRRIKKV LASKSSKVSS KQKETTATNS DLDVKPGYYS KKHCLKSIRS EKNYPIKKRR  300
YFDGYTASQL EETVKNDGLS GSPRKASAFL STIACQKQQS RDSHVKLGIK SFRVPELFIE  360
IPETATVGSL KRTVLEAVTT ILGGGLRIGV LVHGKKVRDD SKMLLQSGIS LDTLSDTLGF  420
CLEPNPPQST KPLSHEDSDF VSPCNIPHPL TRCLPSPGKH AKPSNSVESD LDSKPSAPNR  480
AKPVYSRALI PVAPLHAQAL NVVPPRKPKR SEVAQRRIRR PFSVAEVEAL VQAVERLGTG  540
RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLMAHAYWS  600
QQQGKQQLLE GPHKLETSLG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-575066084106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417794.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLV4L1H90.0V4L1H9_EUTSA; Uncharacterized protein
STRINGXP_006417794.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2