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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676749210 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
bHLH |
| Protein Properties |
Length: 367aa MW: 42400.5 Da PI: 7.1673 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676749210 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40.6 | 4.6e-13 | 177 | 225 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
+r +h ++Er+RR+++N+ ++ Lr+llP++ + ++ + a+i+ A++Y k
676749210 177 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRGDQASIVGGAINYAK 225
699***************************...9****************66 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MERFQGHINP CFLDRKADAR SLEAQRFVLK EEEEEEEESL QDTVPFLQML QSEEDPSPFI 60
SFKEPNFRRL LSLQNLHKPW ELESYLSQED HHLFQSDTNG FYHNQILASS MRGTNKALSS 120
QELPFSRGDM TVPSSSSTPN SRRKRKSSDL VPPEMSREKR KRRKTKPSKN MEDIENQRIN 180
HIAVERNRRR QMNEHINSLR SLLPPSYIQR GDQASIVGGA INYAKVLEQI IQSLESQKRT 240
QQQSSLVENR VNSQETNNHH HHHHLSGISS THEDHQTCIP RIEATLIQNH VNLKVECTKK 300
QGQLLQGIIS LEKLRLTVLH LNISSSSHSA VSYSFNLKME DDCKLESADD ITKVARQIFD 360
IPDDLII
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 143 | 163 | KRKSSDLVPPEMSREKRKRRK |
| 2 | 158 | 163 | KRKRRK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF488600 | 1e-108 | AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence. |
| GenBank | AJ630481 | 1e-108 | AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950. |
| GenBank | AK118527 | 1e-108 | AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14. |
| GenBank | AY088741 | 1e-108 | AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence. |
| GenBank | BT005298 | 1e-108 | BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
J. Exp. Bot., 2015. 66(5): p. 1543-52
[PMID:25582452]
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