PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748808
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 589aa    MW: 66594.4 Da    PI: 9.0484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748808genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS523.57.1e-1601615861374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t+++n see+++++lf++++Pilk+s+l++N+
  676748808 161 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNISEEIHVRRLFFDMFPILKVSYLLTNR 260
                689************************************************************************************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf+fn+ v+++l++l++e+Lrvk+gE
  676748808 261 AIIEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPFQFNP-VVTSLDCLNVEQLRVKTGE 355
                *************************************************....9**************************.7999*************** PP

       GRAS 201 alaVnlvlqlhrll.......................................................desvsles..erdevLklvkslsPkvvvvve 243
                alaV++vlqlh++l                                                       ++s++l++  ++d++L+++++lsPkv+vv+e
  676748808 356 ALAVSSVLQLHNFLasdddflrkncalrfqnnpsgidlqrvltmshgsageapendisnnngyspsgdsASSLPLHNsgRIDRFLNAIWGLSPKVMVVTE 455
                *******************************************************************99777777766799******************* PP

       GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                q++dhn+++++er+le+l++y+alfd+le+k+pr+s++rikvE++++g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ 
  676748808 456 QDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQG 555
                **************************************************************************************************** PP

       GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++dgy+++eesg++v++W+drpL+svSaWr
  676748808 556 YGFDGYMIKEESGCAVICWQDRPLYSVSAWR 586
                ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.707135566IPR005202Transcription factor GRAS
PfamPF035142.5E-157161586IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MTKVMILNPP HVKTKTHKSG GSNLEYRHIC CIGEKKKIRK VRFEKGKEKT KRKKTKPTIT  60
HCLILWTFRR IPNLGFGYSR YESPKVSIFS LKKGLSFTYR SSRFGTSMVA MFQEDNGTSS  120
VASSPLQVFS TMSLTRPTLL ASSSPFHCLK DLKPEERGLY LIHLLLTCAN HVASGSLQNA  180
NAALEQLSHL ASPDGDTMQR IAAYFTEALA NRILKSWPGL YKALNATQTR TNNISEEIHV  240
RRLFFDMFPI LKVSYLLTNR AIIEAMEGEK MVHVIDLDAS EPAQWLALIQ AFNSRPEGPP  300
HLRITGVHHQ KEVLDQMAHR LIEEAEKLDI PFQFNPVVTS LDCLNVEQLR VKTGEALAVS  360
SVLQLHNFLA SDDDFLRKNC ALRFQNNPSG IDLQRVLTMS HGSAGEAPEN DISNNNGYSP  420
SGDSASSLPL HNSGRIDRFL NAIWGLSPKV MVVTEQDSDH NGSTLMERLL ESLYTYAALF  480
DCLETKVPRT SQDRIKVEKM FFGEEIKNII ACEGSERRER HEKLEKWSQR IDLAGFGNVP  540
LSYYAMLQAR RLLQGYGFDG YMIKEESGCA VICWQDRPLY SVSAWRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-391615864375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13453KKKIRKVRFEKGKEKTKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAY0561540.0AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393154.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV4JY520.0V4JY52_EUTSA; Uncharacterized protein
STRINGXP_006393154.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]