PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748384
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 369aa    MW: 42335.2 Da    PI: 4.7586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748384genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0690113226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k  lC ff + G+C+ G +CkF+H+
  676748384  90 KSILCEFFKA-GQCQKGFKCKFSHD 113
                6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.02E-688113IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-588114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27288115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-490113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.784159197IPR000571Zinc finger, CCCH-type
SMARTSM003564159196IPR000571Zinc finger, CCCH-type
PfamPF165436.4E-16217295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKLAAKKKK  60
DEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG  120
EKIDIYSDKR DEDGDMDEWD QETLEKVVES KKNEYNQNKP TDIVCKHFLD AVEKKQYGWF  180
WACPNGGKEC HYRHALPPGY ILKSQMKALL EEESQKMPVE EEIENERSKL KTATQMTPAL  240
FMEWKRKKIA ERDAGLAASQ AERAKNDRMS GRELFLSNAS LFVDDAEAFE EYQREKEEEE  300
EEQKAKSKET EAGTSKSSGD AEQSSKEVEE EEEDDDDDDD LDMDELDELE ASLSKTSIQI  360
REPNNEGSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895341e-79AC189534.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408943.10.0zinc finger CCCH domain-containing protein 21
SwissprotQ9SK740.0C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLV4NUF50.0V4NUF5_EUTSA; Uncharacterized protein
STRINGXP_006408943.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.10.0C3H family protein