PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747662
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 276aa    MW: 31566 Da    PI: 5.9634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747662genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.62e-16190248361
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+eN+ L ke+++ +ke +k  +
  676747662 190 TAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEQENQLLLKEIQHETKERYKKLM 248
                679*********************************************99999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000415.2E-5729IPR001630cAMP response element binding (CREB) protein
Gene3DG3DSA:1.20.5.1704.4E-13186249No hitNo description
PRINTSPR000415.2E-5187203IPR001630cAMP response element binding (CREB) protein
SMARTSM003382.1E-12188253IPR004827Basic-leucine zipper domain
PfamPF001705.7E-15189249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.772190242IPR004827Basic-leucine zipper domain
CDDcd147072.14E-15192245No hitNo description
SuperFamilySSF579594.69E-10192243No hitNo description
PROSITE patternPS000360195210IPR004827Basic-leucine zipper domain
PRINTSPR000415.2E-5205225IPR001630cAMP response element binding (CREB) protein
PRINTSPR000415.2E-5225242IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASFKMISSS TSRNSDLSRR NSSSASSSPS VRSNHLRRDP HADHSRISFG NDVSIHDYAF  60
ASDPMATVEV DRSNGDRNSV NGGRRRSVDD VWKEIVSGEK KTIMKEEAHE DEEEEMMTLE  120
DFLAKAAEMD DDDEDEVDVK IPPESYSFDY PVMPQQQQNP VQMIEGSINS GGTRRKRGRG  180
AMVEAMDKAT AQRQKRMIKN RESAARSRER KQAYQVELET LAAKLEQENQ LLLKEIQHET  240
KERYKKLMEQ LIPVDDDKRK PSSLSRSLSR THSLEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119346.11e-127PREDICTED: G-box-binding factor 4
RefseqXP_013638560.11e-128PREDICTED: G-box-binding factor 4
RefseqXP_013666408.11e-127G-box-binding factor 4-like
SwissprotP427771e-106GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A3P6D8C51e-126A0A3P6D8C5_BRACM; Uncharacterized protein
TrEMBLM4DFK81e-126M4DFK8_BRARP; Uncharacterized protein
STRINGBra015281.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-70G-box binding factor 4