PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747520
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 297aa    MW: 33775.4 Da    PI: 6.8361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747520genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.81.2e-2851366127
        NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                 F+P +eel+++yL++k+++k+ ++ + i++v+i+++eP dLp  +k e++  wyf s+ +k   + kr++ra k+g Wk tg++ ++++++g+ +glkk
  676747520   5 TFNPPEEELINYYLNNKITEKDDPAGKQINDVNICHHEPADLPGLAKIESShTWYFISPVEK-FGRLKRSKRASKTGHWKITGNSCTIKDADGNPIGLKK 103
                7*********************999899***************6444444426777776655.56789******************************** PP

        NAM 105 tLvfy..........kgrapkgektdWvmheyr 127
                 Lvf           + ++ + +k++W++he++
  676747520 104 FLVFQekknkrsstsSSTTTQQHKSTWIIHEFH 136
                *****6554444333234444559********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.5061155IPR003441NAC domain
SuperFamilySSF1019413.53E-324155IPR003441NAC domain
PfamPF023653.8E-174136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNRYTFNPPE EELINYYLNN KITEKDDPAG KQINDVNICH HEPADLPGLA KIESSHTWYF  60
ISPVEKFGRL KRSKRASKTG HWKITGNSCT IKDADGNPIG LKKFLVFQEK KNKRSSTSSS  120
TTTQQHKSTW IIHEFHSFLH HPNKEAFVLC KLMKKTRTRR SGAAADSSRA VTDLPTLISD  180
PVPNHSQMLT QNKNPVEDYG GDYCNDLEEL IPEFDSSKWL DHSYQLDHNH WGSFTEITNP  240
WEQGESSGLP LGESGHVYGQ NTLETSNHLE IGEYWNSEAV VGPRTVSNDH QRSNLNV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222874e-33AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026864e-33CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-165PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A3P6F2481e-141A0A3P6F248_BRAOL; Uncharacterized protein
STRINGBo5g002870.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.12e-79NAC domain containing protein 49