PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747510
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 343aa    MW: 38920 Da    PI: 6.8853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747510genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12200225126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF H+
  676747510 200 YQPDICKDYKETGYCGYGDSCKFLHD 225
                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9198231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009199227IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8199226IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13200230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.1E-13273319IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.0E-9277319No hitNo description
SuperFamilySSF578504.04E-13277321No hitNo description
SMARTSM001846.0E-5278315IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.586278316IPR001841Zinc finger, RING-type
CDDcd001623.15E-8278319No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSDSVDPKTS QQEDSQPALK QESQSQQVCT FFKKPSKPKN IRKRTAVTDE EDEDSKSESS  60
ILNNLKKVAK PDGKLFFSSG PSKSSATTNE DPDKPVFHYD SSKEIQVQND SRATATLETE  120
TDFKQDSRAR RERVLKQAEE ALKGNKNKAS DEKLYTGIHG YTDHKAGFRR EQTISSEKAG  180
GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFLHDRGDYK PGWQIEKEWE  240
EAEKVRKRNK AMGVEDEDDD DANNNDSDDD DDALPFACFI CRDSFVDPVV TKCKHYFCEH  300
CALKHHTKNK KCFVCNKPTM GIFNTAHEIK KRMAEERSKA QGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-632734213326RING finger protein 113A
5z58_M2e-632734213326RING finger protein 113A
6ff4_t2e-632734213326RING finger protein 113A
6ff7_t2e-632734213326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_023645143.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_006305264.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein