PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676747498

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 270aa MW: 31138.2 Da PI: 9.3723

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676747498	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.7	1.8e-39	4	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 p+GfrF+Ptdee++++yL+ k g + + ++++i++vdi +++Pw+Lp k + +++++ wyfF ++++++++g+r++r+tksg+Wk+tg + ++++k 676747498 4 PVGFRFSPTDEEILDHYLRLKNLGGSstTLVDKAISTVDISSFDPWELPpKsRRESRDQVWYFFGCKKNQHKRGERQRRKTKSGFWKKTGDTLDIKRKsg 103 89***************998887753333556**********96435566888*********************************9988 PP NAM 96 kgelvglkktLvfy.kgrapkgektdWvmheyr 127 ++e++g k++Lvf+ +g++pk +k++Wvmhey 676747498 104 NREKMGEKRVLVFHsTGSKPK-SKSEWVMHEYV 135 8889******4456666.8*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-41	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	41.778	3	155	IPR003441	NAC domain
Pfam	PF02365	5.5E-23	4	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MTKPVGFRFS PTDEEILDHY LRLKNLGGSS TTLVDKAIST VDISSFDPWE LPPKSRRESR 60 DQVWYFFGCK KNQHKRGERQ RRKTKSGFWK KTGDTLDIKR KSGNREKMGE KRVLVFHSTG 120 SKPKSKSEWV MHEYVSTFLS PPNQMTFTVC KVMFKGHARD LASFSSGTCC EIDHDDHSLV 180 PRVNKNPGGP STLTTTFNIR FDSSLFIQGV QSLRQFNGLL DEEKETQIDE AIHRVINNLS 240 THDKNYLFNI DVAEEQSNLM FMQEDRLQGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-22	1	134	13	138	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676747498

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022548933.1	6e-92	NAC domain-containing protein 5-like
Swissprot	O81914	1e-75	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A397XN33	3e-90	A0A397XN33_BRACM; Uncharacterized protein
STRING	Bra033298.1-P	1e-90	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	5e-78	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]